Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55550 651 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 553 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 537 / 0 RLK receptor lectin kinase (.1) AT4G29050 533 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 526 / 5e-179 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 514 / 2e-174 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 504 / 1e-170 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70130 476 / 6e-160 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01560 466 / 1e-155 LECRKA4.3 lectin receptor kinase a4.3 (.1) AT3G59700 465 / 2e-155 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024365 [exp] 1167 / 0 AT3G55550 711 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 693 / 0 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 564 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 562 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 560 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 559 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 553 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10029315 [exp] 548 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 543 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G101000 [exp] 801 / 0 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 692 / 0 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 673 / 0 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 599 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 596 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 587 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 577 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 570 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.009G036300 [exp] 560 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 551 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10010867 pacid=23163447 polypeptide=Lus10010867 locus=Lus10010867.g ID=Lus10010867.BGIv1.0 annot-version=v1.0 ATGGCCACCTTCTTTGCTCTAACTCTAATCCTCTTCATCATCTTCTTCTTCTTACAAACTCCTGCTTCATCTCAGCTCACCAAAGATTCCCTCTTCTTCC CCGGATTCAAAAATGCAGCCACAAACTTCACCTTAGCAGGAGCATCACAGATTCAGCCTGACGGAATCCTCCGCCTAACCAACGACACCAACAGAATCAT GGGCCACGCATTCTACGCCTCTCCATTCCGATTCAAGAACTCCACCGACGGTACTAAAGTTGCTTCCTTTTCCACTACTTTCGCTCTTACAATCGTCCCC GAGTATCCAAAACTCGGTGGACATGGTCTCGCATTCACAATCTCCAGCTCCCAACACCTCAAGGCTCTCCCCAGCCAGTACCTCGGCTTATTCAACGCCA CTGACCTCCTTGGTAACATATCCACTGCTCGAACTTTCGCCGTCGAATTCGACACAGTGCAAGATTTCGAATTTGGAGACATTAACGACAACCACATTGG CATCGACATTGACAGCTTGCGGTCCAATGCTTCCGTCTCAGCAGCATATTACCCTGATGATGATGATGGCACCAAAAAGGATCTGAATCTCAAATGTGGG AAGCCGATTCAAGTGTGGATTGATTACGATTCGGTTGGAAACCTGCTCAATGTCACTGTTTCTCCAACTTCAACGAAACCAAAAAGACCGATTCTTTCCT TTCCAGTTGATCTATCTCCAGTTTTTGAAGAGTTCATGTTTGTAGGCTTCTCTGCTTCAACTGGATTGCTAGCTAGCTCGCATTACATTCTCGGATGGAG CTTCAAACTAAACGGAGAAGCTCAGAGATTGGATCTTTCTTCCCTTCCATGGCTTTCCAACTCCAATAACAAATCAAATCAAAGCTTAATAATTGGTATA TCAATAGCATCTGCTTTGATTACAATCTGCATTCTCTCTTTCGTATTAGTTTACCTGGTCAGGAAGAAATTAAGAAATTCTGAAGATAAGATTGAAGATT GGGAGCTGGGAATCGGACCACAGAGATACTCATACAGCGAATTGAAAAGAGCTACTCACAATTTCAGCGAGAAGGAACTTTTAGGAAGCGGCGGATTTGG ACAAGTATACAAAGGAATCATCCCGGAATCGAAAATCCAAGTCGCGGTCAAACGGATTTCCGACGAGTCAAAGCAAGGCCTCCGCGAATTCGTCTCCGAG ATTGGAAGCATTGGGAAGCTTCGTCACCGGAACCTGGTTCAATTGATCGGATGGTGTCGCAGGAAAGGAAACCTTCTGTTAGTGTACGAGTATATGCCAA ACGGCAGCTTGGATACTTTCCTGTTCGATGAACCGAATACTGTATTGAATTGGGAGCAGAGATTCAAAATCATCAAAGACGTAGCGTCGGGTTTGCTCTA CTTACATGAAGGTTACGAACAGGTGGTGATCCACCGAGATGTGAAGGCCAGCAATGTGCTATTGGACGGCGAGATGAACGCAAAGCTGGGGGATTTTGGA CTGGCGAGGCTGTACGAGCGGGGATCGAATCCGGGGACGACTAGGGTTGTGGGGACATTAGGGTATTTGGCACCGGAGATGACGAGGACGGGGAAAGCGA CGGCGGGATCGGATGTTTATGCTCTGGGTGCGCTGTTGCTTGAGGTGGTGTGCGGGCGTCGGCCGATTGATCCGAAGGCGGCGACGGAGGAGCTGGTGTT GGTGGATGTGGTGTGGGAGAGGCTTAAAGATGGGAACATTGGGCGGATCGTTGATCGGAGGATGAATGGGGATTACAACGAAAAGGAGGCGACAGTGGTT TTGAAATTGGGGATCATGTGTTCGTGTCATGAGGCGGCGGCGCGGCCGACTGTGAGGGAGGTGGTTAGGTATTTGGATAGGGAGGTTGAGGTGCCGGAGA GTTACGTTGCGCCAACGACGAGTGGTGGCGCAAGCGGGAGTGGGGTCACTGAAGGTTTTGATGGGTATTTGAATTCGGTTGGGAATACGACGACGTTTGG GTTCATGAGTTCTACGGGGAACTCTTTTCTTGGGAACGGTAACGGGGTATCGGATCTTCGGACTCTTTCCACATCTCCACTGTAA
AA sequence Show only first row Show all	>Lus10010867 pacid=23163447 polypeptide=Lus10010867 locus=Lus10010867.g ID=Lus10010867.BGIv1.0 annot-version=v1.0 MATFFALTLILFIIFFFLQTPASSQLTKDSLFFPGFKNAATNFTLAGASQIQPDGILRLTNDTNRIMGHAFYASPFRFKNSTDGTKVASFSTTFALTIVP EYPKLGGHGLAFTISSSQHLKALPSQYLGLFNATDLLGNISTARTFAVEFDTVQDFEFGDINDNHIGIDIDSLRSNASVSAAYYPDDDDGTKKDLNLKCG KPIQVWIDYDSVGNLLNVTVSPTSTKPKRPILSFPVDLSPVFEEFMFVGFSASTGLLASSHYILGWSFKLNGEAQRLDLSSLPWLSNSNNKSNQSLIIGI SIASALITICILSFVLVYLVRKKLRNSEDKIEDWELGIGPQRYSYSELKRATHNFSEKELLGSGGFGQVYKGIIPESKIQVAVKRISDESKQGLREFVSE IGSIGKLRHRNLVQLIGWCRRKGNLLLVYEYMPNGSLDTFLFDEPNTVLNWEQRFKIIKDVASGLLYLHEGYEQVVIHRDVKASNVLLDGEMNAKLGDFG LARLYERGSNPGTTRVVGTLGYLAPEMTRTGKATAGSDVYALGALLLEVVCGRRPIDPKAATEELVLVDVVWERLKDGNIGRIVDRRMNGDYNEKEATVV LKLGIMCSCHEAAARPTVREVVRYLDREVEVPESYVAPTTSGGASGSGVTEGFDGYLNSVGNTTTFGFMSSTGNSFLGNGNGVSDLRTLSTSPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55550			Concanavalin A-like lectin pro...		Lus10010867 [exp]	0	1
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10029156 [exp]	3.5	0.7977
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	12.8	0.7451
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10023853 [exp]	15.0	0.7087
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10031681 [exp]	15.8	0.7327
AT1G74160			unknown protein		Lus10034678 [exp]	16.4	0.7384
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	24.9	0.7425
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	26.9	0.7303
AT5G48460			Actin binding Calponin homolog...		Lus10038235 [exp]	31.3	0.7168
AT1G67750			Pectate lyase family protein (...		Lus10006456 [exp]	37.6	0.7030
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10039169 [exp]	47.0	0.7158

Compare expression of checked genes

Lus10010867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.