Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37730 305 / 4e-101 Protein of unknown function (DUF604) (.1) AT3G11420 236 / 8e-75 Protein of unknown function (DUF604) (.1) AT4G11350 192 / 9e-58 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT4G23490 191 / 2e-57 Protein of unknown function (DUF604) (.1) AT5G41460 189 / 2e-56 Protein of unknown function (DUF604) (.1) AT1G07850 184 / 2e-54 Protein of unknown function (DUF604) (.1) AT1G01570 181 / 1e-53 Protein of unknown function (DUF604) (.1) AT4G15240 169 / 4e-49 Protein of unknown function (DUF604) (.1) AT1G33250 164 / 6e-47 Protein of unknown function (DUF604) (.1) AT4G00300 163 / 1e-45 fringe-related protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024364 [exp] 433 / 2e-154 AT2G37730 405 / 1e-139 Protein of unknown function (DUF604) (.1) Lus10030153 [exp] 244 / 7e-81 AT2G37730 305 / 6e-101 Protein of unknown function (DUF604) (.1) Lus10002713 [exp] 248 / 1e-79 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1) Lus10024662 [exp] 194 / 3e-61 AT4G23490 441 / 5e-155 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 199 / 2e-60 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 195 / 7e-59 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10018123 [exp] 191 / 2e-57 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 191 / 3e-57 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10033260 [exp] 186 / 2e-56 AT1G33250 546 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G089150 [exp] 328 / 2e-110 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 322 / 2e-108 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 255 / 4e-82 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 251 / 7e-81 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 196 / 2e-59 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 196 / 3e-59 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 194 / 7e-59 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 185 / 4e-55 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 180 / 2e-53 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G454600 [exp] 179 / 1e-52 AT1G33250 629 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10010869 pacid=23163412 polypeptide=Lus10010869 locus=Lus10010869.g ID=Lus10010869.BGIv1.0 annot-version=v1.0 ATGGCCAAGGAGCTCGTCAAGGTGCTCGACGGCTGCATCGATCGATACGCTTCGTTTTACGGCTCCGATCAGAAGGTCCAGGCTTGCATGGTCGAGATCG GCATCCCTCTAACCAAAGAGCTCGGCTTCCATCAGATGGACATAAGGGGGGATCCGTACGGGCTATTGGCGGCGCATCCGGTGACCCCGCTGGTGTCGCT CCACCACGTGGACTATCTCCGTCCGATATTTCCGGGGACAACGTCGCAGGTAAAAGCCATTCGGAAGCTGATGGATTCCTATACGGTGGACCCGAGCAGA ACTCTACAGAGGAGTTTTTGCTACGATTTGAGGCGGAATTGGACGGTGTCGGTGTCTTGGGGGTACACCGTGCAATTGTATCCCTCTCCGGTTACGGCGA AGCAGCTGGACGCAACGATTCAGACGTTCAAGACGTGGAGGACTTGGAAGGAGTCGCCATTCACGTTCAACACCCGAGCCGTCAAGGGGGAAGTACCCGT TCTGTATTTCCTTGAGCAGGGTCGGAGTCGGAATAATGTTGGTCACCTTCTTCCAGAGACTTTGACTACGTACAAGAGACACGTGGCGGGATTTGGTGAC GAGAAAGTCTACAACAGAAGTGAATACCGAGGAGTTACGGCCGTTCAAACTGTCCACGTCATTGCTTCTACGATGGATCCAAAGAGTTGGAATCTGGCAC CGAGAAGACAATGCTGCGAAGTAATCAACGGCGGAGATGATGGGGTTGTACAAGTCAAGATAAGAGGGTGCAATCCATTTGAAAGGGCGGCTATTCCGTA G
AA sequence Show only first row Show all	>Lus10010869 pacid=23163412 polypeptide=Lus10010869 locus=Lus10010869.g ID=Lus10010869.BGIv1.0 annot-version=v1.0 MAKELVKVLDGCIDRYASFYGSDQKVQACMVEIGIPLTKELGFHQMDIRGDPYGLLAAHPVTPLVSLHHVDYLRPIFPGTTSQVKAIRKLMDSYTVDPSR TLQRSFCYDLRRNWTVSVSWGYTVQLYPSPVTAKQLDATIQTFKTWRTWKESPFTFNTRAVKGEVPVLYFLEQGRSRNNVGHLLPETLTTYKRHVAGFGD EKVYNRSEYRGVTAVQTVHVIASTMDPKSWNLAPRRQCCEVINGGDDGVVQVKIRGCNPFERAAIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37730			Protein of unknown function (D...		Lus10010869 [exp]	0	1
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10007879 [exp]	1.7	0.9328
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	1.7	0.9481
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	2.0	0.9450
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	4.0	0.9080
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	6.3	0.9147
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	6.6	0.9272
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	7.0	0.9113
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	7.3	0.9126
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	7.9	0.9058
AT1G18520		TET11	tetraspanin11 (.1)		Lus10000869 [exp]	8.7	0.8740

Compare expression of checked genes

Lus10010869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.