Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39770 247 / 1e-82 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 225 / 3e-74 Glucose-1-phosphate adenylyltransferase family protein (.1) AT4G30570 184 / 2e-58 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G04650 84 / 7e-20 ADP-glucose pyrophosphorylase family protein (.1) AT1G74910 84 / 1e-19 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT3G02270 44 / 1e-05 Trimeric LpxA-like enzyme (.1) AT2G34970 44 / 2e-05 Trimeric LpxA-like enzyme (.1) AT5G19485 41 / 0.0001 transferases;nucleotidyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024356 [exp] 266 / 3e-90 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10004699 [exp] 244 / 1e-81 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 244 / 1e-81 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10030156 [exp] 239 / 6e-80 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10039916 [exp] 92 / 1e-23 AT2G39770 116 / 1e-30 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10032440 [exp] 85 / 4e-20 AT1G74910 747 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10042942 [exp] 85 / 6e-20 AT1G74910 734 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10033841 [exp] 47 / 2e-06 AT2G34970 880 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10018991 [exp] 46 / 2e-06 AT2G34970 869 / 0.0 Trimeric LpxA-like enzyme (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G090300 [exp] 249 / 7e-84 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.010G198800 [exp] 248 / 3e-83 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 248 / 3e-83 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 231 / 2e-76 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.012G075500 [exp] 91 / 4e-22 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.015G070500 [exp] 89 / 1e-21 AT1G74910 736 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.005G045200 [exp] 47 / 1e-06 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1) Potri.009G066400 [exp] 39 / 0.0006 AT5G19485 655 / 0.0 transferases;nucleotidyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10010879 pacid=23163438 polypeptide=Lus10010879 locus=Lus10010879.g ID=Lus10010879.BGIv1.0 annot-version=v1.0 ATGAAGGCACCCATTCTCGTGGGAGGATTTGGGACACGTCTACGGCCTCTTACTCTCAGTGTGCCAAAGCCACTGGTTGATTTCGCCAACAGGCCCATGA TTCTGCATCAGATTGAGGCTCTCAAATCCATTGGAGTTACAGAAGTGGTGTTGGCCATAAATTACCAGCCAGAGGTAATGCTGACTTTCTTGAGAGAGTA CGAGAAAAAGCTCGAAATTACAATCACCTGCTCCCAGGAGACTGAGCCGCTTGGCACGGCAGGTCCCCTGGCTTTAGCTAGAGATAAGCATATAGATGGT TCTGGTGAGCCCTTTTTTGTCCTGAACATCGATGTTATAAGCGAGTATCCTCTGAAAGAAATGATTGCATTTCAGAAGAGTCATGGAGGGGAGGCTTCCA TTATCGTAACAAAGGTATAG
AA sequence Show only first row Show all	>Lus10010879 pacid=23163438 polypeptide=Lus10010879 locus=Lus10010879.g ID=Lus10010879.BGIv1.0 annot-version=v1.0 MKAPILVGGFGTRLRPLTLSVPKPLVDFANRPMILHQIEALKSIGVTEVVLAINYQPEVMLTFLREYEKKLEITITCSQETEPLGTAGPLALARDKHIDG SGEPFFVLNIDVISEYPLKEMIAFQKSHGGEASIIVTKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10010879 [exp]	0	1
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021863 [exp]	1.4	0.7719
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008843 [exp]	2.0	0.8006
AT2G25344		LCR14	low-molecular-weight cysteine-...		Lus10014355 [exp]	19.1	0.6750
AT1G61105			Toll-Interleukin-Resistance (T...		Lus10011216 [exp]	26.2	0.6706
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	27.3	0.7027
					Lus10019151 [exp]	31.5	0.7020
					Lus10012079 [exp]	35.0	0.6997
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10039087 [exp]	38.3	0.6981
AT2G39040			Peroxidase superfamily protein...		Lus10021957 [exp]	41.4	0.5925
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	41.8	0.6972

Compare expression of checked genes

Lus10010879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.