Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39770 114 / 1e-29 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 94 / 2e-22 Glucose-1-phosphate adenylyltransferase family protein (.1) AT4G30570 75 / 1e-15 Glucose-1-phosphate adenylyltransferase family protein (.1) AT1G74910 54 / 3e-08 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT2G04650 50 / 4e-07 ADP-glucose pyrophosphorylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024356 [exp] 125 / 8e-34 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10004699 [exp] 113 / 2e-29 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 113 / 2e-29 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10001014 [exp] 108 / 1e-27 AT2G39770 476 / 1e-169 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10028418 [exp] 89 / 3e-23 AT2G39770 113 / 4e-32 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10032440 [exp] 41 / 0.0007 AT1G74910 747 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10030156 [exp] 0 / 1 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G090300 [exp] 117 / 4e-31 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 112 / 3e-29 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.010G198800 [exp] 111 / 1e-28 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 68 / 5e-13 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.012G075500 [exp] 55 / 1e-08 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010880 pacid=23163426 polypeptide=Lus10010880 locus=Lus10010880.g ID=Lus10010880.BGIv1.0 annot-version=v1.0 ATGATAGGGCCGGATGTTGCTATCGGCCCCGGATGCGTTATTGAGCCTGGGGTTCGGCTTTCGAGGTGCACGGTAATGCGAGGCGTTCACATCAAGAGGC ATGCTTGCGTGTCGAGTAGCATTGTGGGGTGGCATTCGAATGCTTGCGTGTCGAGTAGCATTGTGGGGTGGCATTCGAATGCTTGCGTGTCGAGTAGCAT TGTGGGGTGGCATTCGAATGCTTGCGTGTCGAGTAGCATTGTGGGGTGGCATTCGAATGCTTGCGTGTCGAGTAGCATTGTGGGGTGGCATTCGAATGCT TGCGTGTCGAGTAGCATTGTGGGGTGGCATTCGAATGCTTGCGTGTCGAGTAGCATTGTGGGGTGGCATTCGAATGCTTGCGTGTCGAGTAGCATTGTGG GGTGGCATTCGAATGCTTGCGTGTCGAGTAGCATTGTGGGGTGGCATTCGAATGCTTGCGTGTCGAGTAGCATTGTGGGGTGGCATTCGAATGCTTGCGT GTCGAGTAGCATTGTGGGGTGGCATTCGAATGCTTGCGTGTCGAGTAGCATTGTGGGGTGGCATTCGACTGTGGGGAGGTGGGCGCGTATCGAGAACATG ACGATTCTCGGCGAGGGCGTTCATGTTGGCGATGAAGTTTACAGCAACGGCGGGGTTGTCCTGCCTCACAAAGAGATCAGGAATAGCATATTGAAGCCAG AGATCGTCATGTAA
AA sequence Show only first row Show all	>Lus10010880 pacid=23163426 polypeptide=Lus10010880 locus=Lus10010880.g ID=Lus10010880.BGIv1.0 annot-version=v1.0 MIGPDVAIGPGCVIEPGVRLSRCTVMRGVHIKRHACVSSSIVGWHSNACVSSSIVGWHSNACVSSSIVGWHSNACVSSSIVGWHSNACVSSSIVGWHSNA CVSSSIVGWHSNACVSSSIVGWHSNACVSSSIVGWHSNACVSSSIVGWHSNACVSSSIVGWHSNACVSSSIVGWHSNACVSSSIVGWHSTVGRWARIENM TILGEGVHVGDEVYSNGGVVLPHKEIRNSILKPEIVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10010880 [exp]	0	1
					Lus10023370 [exp]	4.0	0.8797
					Lus10011339 [exp]	4.7	0.8730
AT3G07720			Galactose oxidase/kelch repeat...		Lus10012345 [exp]	5.5	0.8546
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10003799 [exp]	7.1	0.8357
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	9.2	0.8603
AT3G60520			unknown protein		Lus10028179 [exp]	9.4	0.8470
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10017878 [exp]	9.6	0.8578
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034975 [exp]	12.2	0.8369
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10039992 [exp]	14.3	0.8127
AT5G63380			AMP-dependent synthetase and l...		Lus10032755 [exp]	14.7	0.8048

Compare expression of checked genes

Lus10010880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.