Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53850 143 / 1e-44 Uncharacterised protein family (UPF0497) (.1) AT5G02060 139 / 6e-43 Uncharacterised protein family (UPF0497) (.1) AT3G23200 122 / 2e-36 Uncharacterised protein family (UPF0497) (.1) AT2G28370 86 / 9e-22 Uncharacterised protein family (UPF0497) (.1) AT1G49405 67 / 7e-15 Uncharacterised protein family (UPF0497) (.1) AT2G37200 61 / 2e-12 Uncharacterised protein family (UPF0497) (.1) AT4G37235 59 / 1e-11 Uncharacterised protein family (UPF0497) (.1) AT3G50810 49 / 7e-08 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024355 [exp] 172 / 1e-56 AT3G53850 147 / 7e-47 Uncharacterised protein family (UPF0497) (.1) Lus10004698 [exp] 143 / 2e-44 AT3G53850 213 / 6e-72 Uncharacterised protein family (UPF0497) (.1) Lus10040264 [exp] 139 / 1e-39 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10022188 [exp] 101 / 5e-28 AT3G23200 206 / 3e-69 Uncharacterised protein family (UPF0497) (.1) Lus10021202 [exp] 98 / 1e-24 AT1G06620 202 / 2e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037399 [exp] 85 / 3e-21 AT2G28370 259 / 4e-89 Uncharacterised protein family (UPF0497) (.1) Lus10041312 [exp] 85 / 3e-21 AT2G28370 258 / 9e-89 Uncharacterised protein family (UPF0497) (.1) Lus10021469 [exp] 85 / 4e-21 AT2G28370 258 / 7e-89 Uncharacterised protein family (UPF0497) (.1) Lus10000718 [exp] 85 / 5e-21 AT2G28370 254 / 2e-87 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G090400 [exp] 155 / 2e-49 AT3G53850 193 / 5e-64 Uncharacterised protein family (UPF0497) (.1) Potri.010G198700 [exp] 141 / 7e-44 AT3G53850 206 / 5e-69 Uncharacterised protein family (UPF0497) (.1) Potri.010G073000 [exp] 106 / 3e-30 AT3G23200 182 / 7e-60 Uncharacterised protein family (UPF0497) (.1) Potri.008G165500 [exp] 105 / 9e-30 AT3G23200 174 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Potri.004G211400 [exp] 83 / 2e-20 AT2G28370 221 / 2e-74 Uncharacterised protein family (UPF0497) (.1) Potri.009G014600 [exp] 82 / 3e-20 AT2G28370 256 / 2e-88 Uncharacterised protein family (UPF0497) (.1) Potri.016G090100 [exp] 75 / 2e-17 AT2G28370 216 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Potri.009G110200 [exp] 74 / 3e-17 AT3G50810 165 / 5e-53 Uncharacterised protein family (UPF0497) (.1) Potri.004G149332 [exp] 71 / 3e-16 AT3G50810 145 / 3e-45 Uncharacterised protein family (UPF0497) (.1) Potri.007G033600 [exp] 48 / 1e-07 AT4G37235 133 / 1e-40 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10010881 pacid=23163432 polypeptide=Lus10010881 locus=Lus10010881.g ID=Lus10010881.BGIv1.0 annot-version=v1.0 ATGAAGGAGATGTTCGGCAGTCCAGGGACAGTAAGTGGGTTGGTGCTGAGAGTAGGGCAATGTGTGTTGGCTGCTGCTTCAATCGGAGTTATGGCCTGCG CCGATGGCTTTTCTAGCTACACTGCTTTCTGCTACTTGATTGCATCAATGGGACTTCAACTTCTATGGAGCTTTGGACTTGCTTGTCTTGACATGTATGC GTTGAGGAGAAAGAGACACCTCCAGAATCCTGTCCTTGTGAGCTTATTTGTTGTAGGCGATTGGATGGCTTACGAGAAAGTTAGCTCTGCAAAACCACCT CATCAGGATCTAACTTTTGATCCAGTCAGAAAAATGCTCAAAATTCCATCTGATTTTCCACCTGCCAAACCAAGCCGACGGCTTTTCCAACTTATGAGAG AGTTTGTTGAGCTTACAAGTTTATGTTATTCCTAA
AA sequence Show only first row Show all	>Lus10010881 pacid=23163432 polypeptide=Lus10010881 locus=Lus10010881.g ID=Lus10010881.BGIv1.0 annot-version=v1.0 MKEMFGSPGTVSGLVLRVGQCVLAAASIGVMACADGFSSYTAFCYLIASMGLQLLWSFGLACLDMYALRRKRHLQNPVLVSLFVVGDWMAYEKVSSAKPP HQDLTFDPVRKMLKIPSDFPPAKPSRRLFQLMREFVELTSLCYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53850			Uncharacterised protein family...		Lus10010881 [exp]	0	1
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10033291 [exp]	3.2	0.7964
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10003827 [exp]	5.7	0.7762
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034739 [exp]	8.5	0.7707
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	11.6	0.7908
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020051 [exp]	14.1	0.7697
AT5G45030			Trypsin family protein (.1.2)		Lus10038347 [exp]	15.3	0.7760
AT5G60210		RIP5	ROP interactive partner 5 (.1....		Lus10011643 [exp]	15.5	0.7589
AT5G59250			Major facilitator superfamily ...		Lus10040772 [exp]	19.5	0.7465
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10038764 [exp]	23.2	0.7066
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10040081 [exp]	27.2	0.7762

Compare expression of checked genes

Lus10010881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.