Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020633 [exp] 194 / 3e-60 ND / Lus10036312 [exp] 184 / 1e-52 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10000293 [exp] 162 / 3e-45 ND 48 / 2e-05 Lus10001304 [exp] 129 / 5e-33 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10017803 [exp] 112 / 7e-28 ND / Lus10003025 [exp] 112 / 2e-27 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10027612 [exp] 108 / 8e-26 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10025008 [exp] 104 / 2e-24 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10016946 [exp] 103 / 2e-24 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010883 pacid=23163439 polypeptide=Lus10010883 locus=Lus10010883.g ID=Lus10010883.BGIv1.0 annot-version=v1.0 ATGCACCGTGGTCATACCAAGCTTGCCCTCATTGCTTCAAGGCTATTGCTCCTAATCATGACAATTTCTGGTGTTCCGTCCATGACTCAATCCTTGCAGA AGATGCTCAATATAGGCGAGCTTCCGTATCGCTTGAAACTTATTGTGTCAGATTCAATTGCTGAGGCAACATGTGTTCTGCTCGGCGCAACGGCGGATAG AATTCTTCCGATTCCTGCTGCTCAGTTAGTTCGTGCCTATCCCAATGACATGGGAAGATTCCCGCCGGCAATTGAATTTTTGTTGGGCCAGACTGTGGAG TTTGAGGTTCAGCTACCAAAGTTTACCCACTCAAACCCTTTTGGAGATTTTACAATCTATAATATCTCGGGTTTGGTTGTTCATCGCGCTCAACTTGCTG CACAGCTCCCTGCTCCAATCACAGTTAGGCCATTGAGCCCGCCAAGTACTCATACCACACCTCTACCTGGTGATCCCGCATATGTTGCTTCTGTGCCAAC ATATGTTCCAGCTTCTGCAGCTCTGCCCGAGACTTCTAAGGAATCTGTGAGCACCAAAACTAAAGTAACCCCTCCTACAAAACCTGCTTGCAAACTAACT GCGAGGAACACCAAAACCAAAGTGACTTCTCCTGCAAATCCTCCTTGCAAACCAACTACAAGGAAGGCCAAGAGGTCTGCTCTTCCAGAAACTTTTACTC CACCCACACAGGATTGTATTGTTCAGCGTGCACGTGCCCTCTTCCAAACTGGCGCTAAATATCTTAAACAATCAAAAGATGCTATCAGTGACCTTCAGAT TCCAACTGTCTCGGAAACTACCTCATTTCCACGAGCCGTTGCTTCTGAAACTAAATTAACTCTCCTTTTGGTAAAGGTGAAGATTGAAAAACTCCATGCA TCAACCCCTGCCGATCATGTCCCTCCACAAACAGCAATTGGAGATGAAATGCAGCCAGAGCTAGGCCGCGGCAAATGTAGGCAGATAAGGAGACTCATTT TCACCGAATGA
AA sequence Show only first row Show all	>Lus10010883 pacid=23163439 polypeptide=Lus10010883 locus=Lus10010883.g ID=Lus10010883.BGIv1.0 annot-version=v1.0 MHRGHTKLALIASRLLLLIMTISGVPSMTQSLQKMLNIGELPYRLKLIVSDSIAEATCVLLGATADRILPIPAAQLVRAYPNDMGRFPPAIEFLLGQTVE FEVQLPKFTHSNPFGDFTIYNISGLVVHRAQLAAQLPAPITVRPLSPPSTHTTPLPGDPAYVASVPTYVPASAALPETSKESVSTKTKVTPPTKPACKLT ARNTKTKVTSPANPPCKPTTRKAKRSALPETFTPPTQDCIVQRARALFQTGAKYLKQSKDAISDLQIPTVSETTSFPRAVASETKLTLLLVKVKIEKLHA STPADHVPPQTAIGDEMQPELGRGKCRQIRRLIFTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010883 [exp]	0	1
AT4G27450			Aluminium induced protein with...		Lus10018484 [exp]	1.7	0.9252
AT4G19130			Replication factor-A protein 1...		Lus10006887 [exp]	3.5	0.9239
					Lus10011136 [exp]	4.9	0.9041
AT1G10600		AMSH2	associated molecule with the S...		Lus10030875 [exp]	5.1	0.9242
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10019849 [exp]	7.2	0.8695
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10041030 [exp]	9.9	0.8905
AT3G56680			Single-stranded nucleic acid b...		Lus10038997 [exp]	11.8	0.9099
AT4G27450			Aluminium induced protein with...		Lus10011191 [exp]	13.7	0.9108
AT5G49530			SIN-like family protein (.1)		Lus10041724 [exp]	14.7	0.8653
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10025092 [exp]	15.0	0.8794

Compare expression of checked genes

Lus10010883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.