Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51490 676 / 0 TMT3 tonoplast monosaccharide transporter3 (.1.2) AT4G35300 602 / 0 TMT2 tonoplast monosaccharide transporter2 (.1.2.3.4.5) AT1G20840 569 / 0 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1) AT1G30220 136 / 2e-33 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G35740 134 / 1e-32 ATINT3 nositol transporter 3 (.1) AT4G16480 134 / 1e-32 ATINT4 inositol transporter 4 (.1) AT4G36670 127 / 5e-31 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G20780 124 / 6e-30 AtPLT4 Major facilitator superfamily protein (.1) AT3G18830 119 / 4e-28 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT1G05030 119 / 5e-28 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012709 [exp] 1149 / 0 AT3G51490 818 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10022988 [exp] 624 / 0 AT4G35300 1095 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10030726 [exp] 611 / 0 AT4G35300 962 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001386 [exp] 603 / 0 AT4G35300 1074 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001385 [exp] 602 / 0 AT4G35300 1071 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10013208 [exp] 580 / 0 AT4G35300 954 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10022989 [exp] 550 / 0 AT4G35300 977 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10028118 [exp] 139 / 3e-34 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 138 / 4e-34 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098900 [exp] 716 / 0 AT4G35300 759 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.002G006200 [exp] 620 / 0 AT4G35300 904 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.009G168500 [exp] 618 / 0 AT4G35300 934 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.004G207100 [exp] 617 / 0 AT4G35300 965 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.005G255400 [exp] 613 / 0 AT4G35300 915 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.016G010600 [exp] 132 / 3e-32 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015300 [exp] 132 / 5e-32 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 129 / 5e-31 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.017G032200 [exp] 126 / 2e-30 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G027900 [exp] 125 / 5e-30 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10010886 pacid=23172505 polypeptide=Lus10010886 locus=Lus10010886.g ID=Lus10010886.BGIv1.0 annot-version=v1.0 ATGAGGGGAGCTGTGCTCGTAGCCATCGCTGCTACTATCGGCAACTTCTTGCAAGGATGGGACAATTCCACCATTGCAGGGGCGGTAATATACATAAAGA AGGAATTCAAGCTAGAATCCCAGCCAACGGTGGAAGGCTTAATAGTGGCAATGTCGTTGGTCGGAGGGACATTCATCACGACATTCTCCGGTCCAGTGGC CGACAAGTATGGCCGGAGGCCGATGCTGATCCTCTCCTCGCTCTGTTACCTGATCGGCAGCTTAGTTATGCTATGGTCTCCTAACGTCCACACTTTGCTA GCGGCGAGGCTTCTCGACGGATTCGGGATCGGCCTCGCCGTCACCCTCGTCCCTCTTTACATCTCTGAGACTGCTCCCTCGGAGATCAGAGGGACTCTGA ACACCCTCCCACAGTTTTTGGGTTCGGGAGGGATGTTCTTGTCGTACATCATGGTGTTCTTCATGTCGCTGCAGGATTCGCCTAATTGGAGGGTGATGTT GGGAGTTCTTGCCATTCCTTCGCTCCTTTTCCTCGTCGTCGCCGTTCTTTTCGTGCCGGAATCACCGAGGTGGCTCGTTAGTAAGGGGAGGTTGGATGAG GCTAAGTTGGTCTTGCAGAGGCTCCGCGGCAGGGACGATGTTGCTGGGGAGATGGCATTGCTACTGGAAGGACTTGGAGTGGGGAAAGACCCATCAATTG AAGAATACGTCGTAGGGCCAGCCGACGGCGGCGATATCCAAGGGGAGGATAATCCGGTGGAGAAAATGGGAGAAGTCCGACTGTACGGAGCGGAGGAAGG AGTTTCGTGGGTGGCGAAGCCGGTGACGGCAGGGCAGAGCACGCTGGCCGTAGTATCAAGACAGGGGAGCTTAGCCAACCAGAACATCCCATTAATGGAT CCTCTCGTTACTCTCTTCGGAAGCGTCCATGAAAACAATCTCCCAACATCTTCCTCTATGATGGGCAGCATGAGGGGGAGCATGTTCTTCCCCACCTCCG GCAGCATGCTCAGCATGTTCACCGGCGGAAACAAGGCCTCCGCGGGGGAGCCGAATTGGGCCGACGAGGAGAGCCAGAGAGTCGATAGTCAGGAGGAGGA CAATGGAAATGCGGCTCCGCTGCTGTTGCCGTACGGCGGGAGTAGCATGTTCGCTAGTGTGACGAGGAATAGTAGTTTGTTCCCCGGCGGCGACGGCATC GAAGGAGTTGGGATCGGAGGAGGATGGCAGCTGGCTTATAAGTATCCACATGGGAAAAAGGACGGCGGGTTGCAGAGAGTGTACCTTCACGGCGGGGCGG CGGCCGGGTCGAGACGGGGGTCGATGTTGTCGAGCGTGGGTCCGGGGATGGATGTGGCGGCGGAGGAGTGTGCGCCGGCGGCGGCTCTTGTTAGCACGGC GGCGGTTTGTTCCAAGGAAATGCTCGGCGGCGGGAAGCCACAAGTAGGGCGGCGGGCGGAGAAGCAGGGTGACGACGGTGCTAGATTGGCTGATCTTTGT GATCCGGGGATTAAGCGGGCGTTGCTGGTCGGAGTTGTGCTTCAGTTTCTTCAACAGATATCGGGGATCAACGGGGTGTTGTACTACGCACCTCAGATTC TGCAAGAGGCAGGGGTTTCAGTTCTTCTGTCGAGTCTAGGGTTGAGATCCGACTCTGCATCAATCCTCATCAGCCTTTTCTCCACCATTGTTATGCTCCC CTGCATCATTGTTTCCATGAGGATCATGGACGTCGCCGGTAGAAGGTCAATATTGCTGTACACAATCCCAGTCCTAGTGGTGGCCTTAGTCGCAATAGTG TTCAGCAGCATAGTAACCATGGGAGAAGTCCTTAGAGCCATAATATCCACAGGAGGAGTGGTGATCTACATGAGCGGTTTCGTCATGGGGTTCGGAGTCA TCCCGAACATCCTCTGCGCGGAGATCTTCCCGACCGCTGCCCGCGGACTCTGCATCACCGTGTGTGCTCTCACTTACTGGATCATGAACATCATCGTCAC CTATTCGTCCCCGCTTCTCCTCAACAGCCTCGGCCTGGCAGGAGTGTTCACCATCTTCGGGGTCGGGTGTATGATCTCGTGGGTGTTTGTTTTCCTCAAA GTGCCCGAGACTAAAGGGATGCCTTTGGAAGTCATTTCCGAGTTCTTTGCTGCTGGTGCCTCCGTTCTTGATCGCCACAACTGA
AA sequence Show only first row Show all	>Lus10010886 pacid=23172505 polypeptide=Lus10010886 locus=Lus10010886.g ID=Lus10010886.BGIv1.0 annot-version=v1.0 MRGAVLVAIAATIGNFLQGWDNSTIAGAVIYIKKEFKLESQPTVEGLIVAMSLVGGTFITTFSGPVADKYGRRPMLILSSLCYLIGSLVMLWSPNVHTLL AARLLDGFGIGLAVTLVPLYISETAPSEIRGTLNTLPQFLGSGGMFLSYIMVFFMSLQDSPNWRVMLGVLAIPSLLFLVVAVLFVPESPRWLVSKGRLDE AKLVLQRLRGRDDVAGEMALLLEGLGVGKDPSIEEYVVGPADGGDIQGEDNPVEKMGEVRLYGAEEGVSWVAKPVTAGQSTLAVVSRQGSLANQNIPLMD PLVTLFGSVHENNLPTSSSMMGSMRGSMFFPTSGSMLSMFTGGNKASAGEPNWADEESQRVDSQEEDNGNAAPLLLPYGGSSMFASVTRNSSLFPGGDGI EGVGIGGGWQLAYKYPHGKKDGGLQRVYLHGGAAAGSRRGSMLSSVGPGMDVAAEECAPAAALVSTAAVCSKEMLGGGKPQVGRRAEKQGDDGARLADLC DPGIKRALLVGVVLQFLQQISGINGVLYYAPQILQEAGVSVLLSSLGLRSDSASILISLFSTIVMLPCIIVSMRIMDVAGRRSILLYTIPVLVVALVAIV FSSIVTMGEVLRAIISTGGVVIYMSGFVMGFGVIPNILCAEIFPTAARGLCITVCALTYWIMNIIVTYSSPLLLNSLGLAGVFTIFGVGCMISWVFVFLK VPETKGMPLEVISEFFAAGASVLDRHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51490		TMT3	tonoplast monosaccharide trans...		Lus10010886 [exp]	0	1
AT3G22640		PAP85	cupin family protein (.1)		Lus10042617 [exp]	7.7	0.6172
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10008232 [exp]	8.3	0.5908
AT3G49070			Protein of unknown function (D...		Lus10018879 [exp]	52.0	0.5445
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10038184 [exp]	52.6	0.5635
AT2G25270			unknown protein		Lus10026050 [exp]	138.2	0.4832
AT4G34880			Amidase family protein (.1)		Lus10002805 [exp]	150.4	0.4768
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10041474 [exp]	162.9	0.4779
					Lus10022170 [exp]	200.8	0.4565
					Lus10018846 [exp]	223.4	0.4738

Compare expression of checked genes

Lus10010886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.