Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71070 565 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 387 / 9e-132 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 372 / 2e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G15350 358 / 6e-121 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G27480 352 / 2e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G03520 348 / 6e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 342 / 4e-114 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G24040 340 / 7e-114 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G03690 319 / 2e-106 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 314 / 1e-103 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012710 [exp] 766 / 0 AT1G71070 561 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 396 / 2e-135 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 395 / 2e-135 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10023687 [exp] 376 / 8e-128 AT3G24040 491 / 2e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10011765 [exp] 370 / 1e-125 AT3G24040 491 / 4e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 360 / 2e-121 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 356 / 4e-120 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10030084 [exp] 348 / 1e-116 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 347 / 3e-116 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G128000 [exp] 638 / 0 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G114800 [exp] 616 / 0 AT1G71070 581 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 388 / 1e-132 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 381 / 8e-130 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.011G119600 [exp] 360 / 7e-122 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G263000 [exp] 360 / 3e-121 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 358 / 1e-120 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 355 / 1e-119 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 347 / 3e-116 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G053800 [exp] 342 / 1e-114 AT3G24040 505 / 6e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10010887 pacid=23172510 polypeptide=Lus10010887 locus=Lus10010887.g ID=Lus10010887.BGIv1.0 annot-version=v1.0 ATGCAGCATTATTTGGTTAACCTCCCTAGGCAGAAGCAAGCACCGAAACTGAAGCAGGAGCCGGCATCGGCGTTCGTAGTTAATACCATGGGAGTAGAGA GACGTTGGCTTTTCGTTCTTTTCTCGGCAGCATCCATTTCGCTCCTGTTTCTAGTAGTTTACTCCGGCTCTGCTTTCAGCTTCTCCAAGACCTTGCCTTC TGCTGTCCGCCATGGGCCCCATTACCCGCCATCTTTTGCTTATTACATATCTGGAACGAGGGGAGATGGGAATAGGATCCTAAGGTTATTGCTTGCAGTC TATCACCCGAGAAACCGTTATTTGTTGCATTTGAGTGCCGATGCATCCGATGAGGAGAGACTGAGACTCATTGCTGCTGTAAATGCAGTGCCTGCAGTGA GGAGTTTTGGGAATGTTGATGTTCTAGGCAAGCCAAATCGCCTTACCTACATGGGGGCTTCTCATATTGCGTCCATATTACGTGCTGCTTCGATTTTGTT GAGGTTGGATTCCGGGTGGAATTGGTTTGTCGTGTTGAGTGCTGTGGATTATCCTCTGGTGACACAGGATGATTTATCATACGTGTTCTCTTCCGCAAGC AGGGATCTCAATTTCATTGATCACAGCAGCGACCTGGGCTGGAAAGAAACAGATAGGTTCCAGCCCATTGTAGTTGATCCAGGGATTTATCTTGCAAGAA GAACACAAATCTTCTATGCCACGGAGAAGCGGAAAGCACCCGATGCTTTCAAAATATTCACAGGCAGTTCCCCATGGGTTATCTTGAGTCGACCGTTCGT GGAGTTCTGCATCCTCGGTTGGGACAGCCTTCCTCGGGTCCTACTCATGTATTTCAACAACGTGATTCTTTCCGAAGAGAGCTATTTCCAATCGGTGATC TGCAACGCACCGGATTTCAAGAACACGACTGTAAATAACGACCTCCGGTTCACGGTGTGGGACAATCCTCCGAAGATGGAGCCGCATTTCCTCAACAGTT CGGATTACGAGCTGCTTTCGCGGAGTGGAGCGGCTTTTGCGAGGCAGTTTCAGAAAGACGATCCTGTTCTGGGGATGATCGACGACAAGATACTCAATCG TGGACGGAATCAAGTCGTCCCTGGTGGTTGGTGCACCGGGAGGCGGAGCTGGTGGTCCGATCCTTGCTCCGAGTGGGGTGACGTGAACTTTGTAAAGCCC GGACCTCAAGCGAAGAGGTTTGAAGAGACCATTTCGAACCTTCGTGACGAGTGGAGTTCGCAGATGAATCAGTGCAAAGAGAGCGTGTTGTAA
AA sequence Show only first row Show all	>Lus10010887 pacid=23172510 polypeptide=Lus10010887 locus=Lus10010887.g ID=Lus10010887.BGIv1.0 annot-version=v1.0 MQHYLVNLPRQKQAPKLKQEPASAFVVNTMGVERRWLFVLFSAASISLLFLVVYSGSAFSFSKTLPSAVRHGPHYPPSFAYYISGTRGDGNRILRLLLAV YHPRNRYLLHLSADASDEERLRLIAAVNAVPAVRSFGNVDVLGKPNRLTYMGASHIASILRAASILLRLDSGWNWFVVLSAVDYPLVTQDDLSYVFSSAS RDLNFIDHSSDLGWKETDRFQPIVVDPGIYLARRTQIFYATEKRKAPDAFKIFTGSSPWVILSRPFVEFCILGWDSLPRVLLMYFNNVILSEESYFQSVI CNAPDFKNTTVNNDLRFTVWDNPPKMEPHFLNSSDYELLSRSGAAFARQFQKDDPVLGMIDDKILNRGRNQVVPGGWCTGRRSWWSDPCSEWGDVNFVKP GPQAKRFEETISNLRDEWSSQMNQCKESVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10010887 [exp]	0	1
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	1.4	0.9489
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10006062 [exp]	1.7	0.9356
AT3G12110		ACT11	actin-11 (.1)		Lus10004956 [exp]	3.7	0.9360
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10018338 [exp]	4.9	0.9283
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	5.7	0.9314
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10001713 [exp]	6.3	0.9213
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10032817 [exp]	7.5	0.9281
AT1G67930			Golgi transport complex protei...		Lus10020754 [exp]	9.5	0.9140
AT3G16200			unknown protein		Lus10006829 [exp]	9.5	0.9229
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	10.0	0.9303

Compare expression of checked genes

Lus10010887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.