Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05270 164 / 4e-44 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G77580 147 / 5e-38 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 135 / 5e-34 Plant protein of unknown function (DUF869) (.1) AT1G19835 116 / 3e-27 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 110 / 3e-25 Plant protein of unknown function (DUF869) (.1) AT1G47900 103 / 5e-23 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT2G23360 77 / 1e-14 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012712 [exp] 676 / 0 AT1G77580 233 / 1e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 167 / 3e-45 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10025674 [exp] 168 / 7e-45 AT1G77580 343 / 9e-109 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10042719 [exp] 167 / 1e-44 AT1G77580 386 / 5e-125 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10018164 [exp] 166 / 2e-44 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10029679 [exp] 163 / 5e-43 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024324 [exp] 122 / 5e-29 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 120 / 2e-28 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 114 / 3e-27 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098500 [exp] 162 / 3e-43 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 161 / 1e-42 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 160 / 1e-42 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 159 / 3e-42 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G024400 [exp] 117 / 1e-27 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 117 / 2e-27 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 81 / 7e-16 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 69 / 6e-12 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 67 / 2e-11 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 59 / 4e-09 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10010888 pacid=23172440 polypeptide=Lus10010888 locus=Lus10010888.g ID=Lus10010888.BGIv1.0 annot-version=v1.0 ATGGAGCGGAGGAGCTGGATGTGGAGAAAGAAGTCATCGTCGGCGACGTCCCCCTCTTCCGACAAGCAGATCAGTAGTATTCTCCCTCCCGATTTCTCCG ACGGCGGATCGCTTGGATCTTTCTCTGAACGGTTCTCCGACGATCACCATCATCAGGCCTCGTATTCTTCAACGGCAACTCAATCGCCGTTAGATGATCA GCCCGGCGACGATGACGATCTCAACGTTCTGAAACAGAGACTCTCCGATGCGCTTCTTAAACTCAGCGCCAAGGACGATTTGGTTGCTCAGCATGCCAAA GTCGCTGAAGAGGCAGTTTCTGGCTGGGAGAAAGCAGAGAAGGAAGTAGTGGCTCTGAGGCAGCAGCTTGAGGATGTAACCAAGAAGAAGGGGGAGCTCG AAGATCGAGTCAGCCATCTCGATGCAGCACTCAAAGAGTGCATGAGACAACTCCGTGTAGCCAGAGACGACCAACAACACCTCGCTACAAAAGCTCGCGA ACTCGAGTCTTTGAATTCGGACCTTGTTTCGCAGATTTCTCGACTCCAAGACCAACCTCAAGCCGACAGGAGGGGTGAGACAGCGTCTACTGCATCATCA CCATCACCATCGTATGTTGATGGTGTCGAGTTTAGAGCGAAGATCGAAGGTCTTGAGAAGGAGAACTCATCCCTTAAACACATGCTTCTCTGTCGAGCAG AGGAGCTGGAAATCCGAATAATGGAAAGAGACCTCAGCTCGCAAGCTGCCGAAGCTGCTAGAAAACAGAACTTGGAGGCGATGAAAAAGGTTACCAGACT CGAGGCAGAATGTCGCAAGCATCGAGGAGGAAGAATAAGCAGATCATCGTGTTCTGGTTCACCTGCTTCTTCTGTTGGACAAAGCAGGATCATCATGTTG CCTTGTGCAGAAATCAACCTCATGGATGATTTCCTCGAGATGGAAAGGCTCGCTGCTTCAACTGACGAACTACCTTCAGCTGTTTCTTGCGAAACAAGCA ACAGCAGTGAAGGACTTCAGGCCAGGATTGCTGAACTAGAAGAAAAACTGGACGAAAGGCAATGTGAGGTAGGGATGTTGCAGAGTCAGCTGAGGGAAAC TGATGCGGAGCTTTTGGTGCTGCAAACCGAGTTAGCTCGTGCGAACGAATCGATCAGAGCGGGAGAAGAAGAGCTTGAGGGCGTCAAGGCGATGAAAGAA GATGCAGAGGAGGCGATCAGAATGCTGCTCTCCAGAGTTGAGAAAGAGAGTGCTTCTGCAGCTGAAAATGCAAACAAGTGTGTAGAACTGCAGAAGAGGG TTTGGGAAATGGAGCATGAATCCGAACTCCGTCGAGAAGATGAGATCAAGCGTGTCATGAGCTTCAAGGAAGAGCTCAGGGCAAAACAGGAGAGGGAGCT TGGATTCGCGGCAGCGAACTTCGCAGAGTGCCAGAAAACGATCTCGAATCTGGGTCGTCAGCTGAAATCTCTTGCTGCAATGGAAGAAGAATTGCTAGTT TCCTAG
AA sequence Show only first row Show all	>Lus10010888 pacid=23172440 polypeptide=Lus10010888 locus=Lus10010888.g ID=Lus10010888.BGIv1.0 annot-version=v1.0 MERRSWMWRKKSSSATSPSSDKQISSILPPDFSDGGSLGSFSERFSDDHHHQASYSSTATQSPLDDQPGDDDDLNVLKQRLSDALLKLSAKDDLVAQHAK VAEEAVSGWEKAEKEVVALRQQLEDVTKKKGELEDRVSHLDAALKECMRQLRVARDDQQHLATKARELESLNSDLVSQISRLQDQPQADRRGETASTASS PSPSYVDGVEFRAKIEGLEKENSSLKHMLLCRAEELEIRIMERDLSSQAAEAARKQNLEAMKKVTRLEAECRKHRGGRISRSSCSGSPASSVGQSRIIML PCAEINLMDDFLEMERLAASTDELPSAVSCETSNSSEGLQARIAELEEKLDERQCEVGMLQSQLRETDAELLVLQTELARANESIRAGEEELEGVKAMKE DAEEAIRMLLSRVEKESASAAENANKCVELQKRVWEMEHESELRREDEIKRVMSFKEELRAKQERELGFAAANFAECQKTISNLGRQLKSLAAMEEELLV S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77580			Plant protein of unknown funct...		Lus10010888 [exp]	0	1
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10005952 [exp]	2.4	0.8789
AT2G46710			Rho GTPase activating protein ...		Lus10005998 [exp]	4.2	0.8625
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10021968 [exp]	6.9	0.8797
AT1G30630			Coatomer epsilon subunit (.1)		Lus10023385 [exp]	14.0	0.8413
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10031611 [exp]	14.0	0.8551
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10031650 [exp]	14.2	0.8910
AT5G42660			Protein of unknown function (D...		Lus10032311 [exp]	17.3	0.8467
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Lus10006156 [exp]	17.7	0.8710
AT5G62930			SGNH hydrolase-type esterase s...		Lus10027675 [exp]	19.4	0.7937
AT2G27740			Family of unknown function (DU...		Lus10019529 [exp]	20.2	0.8557

Compare expression of checked genes

Lus10010888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.