Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33470 610 / 0 HDA14, ATHDA14 histone deacetylase 14 (.1) AT5G61060 179 / 5e-50 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT5G61070 172 / 3e-47 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT1G08460 166 / 4e-47 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT3G18520 164 / 5e-45 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT4G38130 84 / 2e-17 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT3G44680 80 / 4e-16 HDA09, HDA9 histone deacetylase 9 (.1) AT5G63110 80 / 6e-16 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT5G26040 64 / 7e-11 HDA2 histone deacetylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012713 [exp] 708 / 0 AT4G33470 508 / 2e-180 histone deacetylase 14 (.1) Lus10034689 [exp] 170 / 1e-46 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10001850 [exp] 154 / 8e-43 AT1G08460 558 / 0.0 histone deacetylase 8 (.1) Lus10017845 [exp] 158 / 2e-42 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2) Lus10013343 [exp] 152 / 9e-42 AT1G08460 559 / 0.0 histone deacetylase 8 (.1) Lus10024919 [exp] 152 / 1e-40 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10022906 [exp] 149 / 2e-39 AT3G18520 582 / 0.0 histone deacetylase 15 (.1.2) Lus10043337 [exp] 86 / 7e-18 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10019486 [exp] 86 / 7e-18 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064200 [exp] 658 / 0 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.004G092900 [exp] 170 / 9e-47 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 159 / 5e-43 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.009G020500 [exp] 144 / 5e-39 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.012G083800 [exp] 88 / 9e-19 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.001G460000 [exp] 87 / 3e-18 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.015G082500 [exp] 82 / 1e-16 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.009G170700 [exp] 80 / 4e-16 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.004G209800 [exp] 80 / 6e-16 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.006G230300 [exp] 69 / 9e-13 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10010889 pacid=23172452 polypeptide=Lus10010889 locus=Lus10010889.g ID=Lus10010889.BGIv1.0 annot-version=v1.0 ATGATTGCTGATTCTGGTTGTTACGAATCTCTAGGTCTCAAACGCTTGCGCATTTGCTCGAGACGGCACTGCAGGCCAGCTGCTCGAAATTATGTTTCGT GTTCGAATCATTTGGAGAAGCAATCAGAGCCGCTTCCAATTATGAATTTAACTGATGCGCGAGTCATCTACAGCGTGGCTCCTGCCATGGGCCATAACCA GGAGGCACATCCAGAATCCCATTTCAGGGTGCCTGCAATTGTTAGTGCTCTTGAAAAGATGGAACTTACTCCAAAGTTTCGTGGTTCAGAGATCATTGAG CTTACAAGTTTCAAACCTGCTTCAGTGGATGAGATTGCAAATGTTCATAGTAAAGGATATGTCACAGGCCTTGAAAAGGCTATGGATAAAGCTTCTCATC AAGGCATTATATTAATCGAGAGAACTGGGCCAACCTATGCCACTTCAACAACGTTCCAGGAGTCGCTTGTGGCAGCTGGAGCTGGAATGTCGTTGGTTGA TTCAGTGGTTGCAGCATCAAAGAACTGTCAGAATCCTCCCACAGGGTTTGCTCTGATAAGACCACCGGGGCATCATGCAGTTCCTAAGGGCCCAATGGGA TTTTGTGTCTTCGGTAACGTGGCGATTGCAGCACGTCACGCTCAGCGCCAGCATGGACTGAAGAAAGTCTTCATCATTGATTTTGATGTTCACCATGGAA ATGGGACAAATGACACATTTTATGATGATCCAGATGTGTTCTTCTTATCTACACACCAGAATGGAAGCTACCCGGGTACGGGTAAGATAGACCAGGTTGG TGTTGGTGCCGGCGAAGGAACAACACTGAATCTGCCTCTACCTGGAGGATCAGGTGACACAGCAATGAGGACTGTTTTTGATGAAGTCATTGCACCATGC GCTCAAAGGTTCAAGCCAGACATTATCCTCGTATCTGCAGGTTATGATGGGCATGTACTGGATCCACTTGCCAGCCTACAGTACACAACATCAACCTACT ACTCTCTCGCATCCAACATCAAGCAGCTGGCAAAGGACTTGTGCGGGGGACGGTGCGTATTCTTCTTGGAAGGAGGTTATAACCTAGAATCTCTATCGAA TTCGGTGGCCGATACGTTTAGAGCCTTACTAGGGGACAAGAGCATGGCTTCAGAGTTCGATAACCCCGCCATCCTGTACGAGGAACCATCGTCCAGGGTT AAGCAGGCGATCGAGAGAGTGAAACATTTGCATTCCCTCTGA
AA sequence Show only first row Show all	>Lus10010889 pacid=23172452 polypeptide=Lus10010889 locus=Lus10010889.g ID=Lus10010889.BGIv1.0 annot-version=v1.0 MIADSGCYESLGLKRLRICSRRHCRPAARNYVSCSNHLEKQSEPLPIMNLTDARVIYSVAPAMGHNQEAHPESHFRVPAIVSALEKMELTPKFRGSEIIE LTSFKPASVDEIANVHSKGYVTGLEKAMDKASHQGIILIERTGPTYATSTTFQESLVAAGAGMSLVDSVVAASKNCQNPPTGFALIRPPGHHAVPKGPMG FCVFGNVAIAARHAQRQHGLKKVFIIDFDVHHGNGTNDTFYDDPDVFFLSTHQNGSYPGTGKIDQVGVGAGEGTTLNLPLPGGSGDTAMRTVFDEVIAPC AQRFKPDIILVSAGYDGHVLDPLASLQYTTSTYYSLASNIKQLAKDLCGGRCVFFLEGGYNLESLSNSVADTFRALLGDKSMASEFDNPAILYEEPSSRV KQAIERVKHLHSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10010889 [exp]	0	1
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10012713 [exp]	1.0	0.8930
AT5G04440			Protein of unknown function (D...		Lus10037929 [exp]	2.8	0.8735
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	3.5	0.8690
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10025698 [exp]	4.5	0.8593
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10035705 [exp]	6.1	0.8090
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10034658 [exp]	7.5	0.8483
AT5G40270			HD domain-containing metal-dep...		Lus10029160 [exp]	9.9	0.8355
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10023930 [exp]	11.0	0.8493
AT5G22850			Eukaryotic aspartyl protease f...		Lus10021397 [exp]	16.7	0.8125
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10003969 [exp]	17.8	0.8665

Compare expression of checked genes

Lus10010889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.