Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19680 361 / 2e-126 Leucine-rich repeat (LRR) family protein (.1) AT5G22320 60 / 2e-10 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G78230 51 / 3e-07 Outer arm dynein light chain 1 protein (.1) AT4G03260 47 / 8e-06 Outer arm dynein light chain 1 protein (.1.2) AT2G30105 44 / 4e-05 unknown protein AT1G58190 40 / 0.001 AtRLP9 receptor like protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012715 [exp] 444 / 3e-159 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10013308 [exp] 62 / 6e-11 AT5G22320 362 / 9e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10005198 [exp] 58 / 1e-09 AT5G22320 318 / 9e-105 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10033444 [exp] 51 / 4e-07 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1) Lus10018514 [exp] 50 / 6e-07 AT4G03260 509 / 1e-172 Outer arm dynein light chain 1 protein (.1.2) Lus10020932 [exp] 50 / 6e-07 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1) Lus10023270 [exp] 44 / 0.0001 AT2G34680 1368 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10025578 [exp] 43 / 0.0001 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10039729 [exp] 42 / 0.0002 AT4G03260 429 / 2e-142 Outer arm dynein light chain 1 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G163900 [exp] 373 / 6e-131 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G086200 [exp] 372 / 1e-130 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.004G199200 [exp] 64 / 1e-11 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.005G164000 [exp] 51 / 4e-07 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1) Potri.019G119500 [exp] 50 / 5e-07 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.002G097800 [exp] 50 / 6e-07 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.019G119300 [exp] 49 / 1e-06 AT4G03260 549 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.005G007900 [exp] 48 / 3e-06 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.011G090200 [exp] 48 / 3e-06 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.005G009700 [exp] 47 / 8e-06 AT1G74190 453 / 4e-141 receptor like protein 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10010891 pacid=23172471 polypeptide=Lus10010891 locus=Lus10010891.g ID=Lus10010891.BGIv1.0 annot-version=v1.0 ATGCTGTTTGTTTGTTTGGCTCAATCTGCCAATCAGGAACTGGTCCTTCGAGATAATAAGCTTGCTAAAATCCCTGACGCCGCCTTGTTCAAGAAACTAT TGGTTTTTGACGTCTCTTTCAATGAGATCGTTTCGTTGATAGGACTGTCCAATGTATCGCCTACGCTCAGAGAGCTGTACGTCTCCAAGAACGAAGTTCC TAAGATTGAGGAGATTGATCACCTCTTTCAGCTGCGGATTCTTGAACTCGGTTCCAATAGACTCAGGGTAATGGAGAACCTGGAAAATCTGACGAACTTG GAGGAGTTATGGCTTGGACGGAATCGTATCAAATTGGTTAACCTCTGTGGATTGAAATGCATAAAAAAGATTAGCTTGCAGAGCAATCGATTGACTTCGA TGCAGGGTTTTGAGGGCTGTGTTTCTTTGGAGGAGCTTTACTTGAGCCATAATGGTATTGAGAAAATGGAAGGGCTATCAACCTTGGTTAACCTCCACGT GCTTGATGTATCGTCTAACAAGCTGACATCAGTTGATGACATTCAGAATCTGACAAAGTTGGAAGATCTGTGGCTTAATGACAACAGGATAGAATCACTT GGAAGCATTAATGATGCTGTTGCTGGATCAAGAGAGAAACTGACCACGATCTACCTGGAAAACAATCCATGTGCAAAGGCTCCAGGCTACTGCTCCACTT TGAAGGAGATATTTCCAAATATTCTACAGATTGACTCCAACGTGTATGGTTAG
AA sequence Show only first row Show all	>Lus10010891 pacid=23172471 polypeptide=Lus10010891 locus=Lus10010891.g ID=Lus10010891.BGIv1.0 annot-version=v1.0 MLFVCLAQSANQELVLRDNKLAKIPDAALFKKLLVFDVSFNEIVSLIGLSNVSPTLRELYVSKNEVPKIEEIDHLFQLRILELGSNRLRVMENLENLTNL EELWLGRNRIKLVNLCGLKCIKKISLQSNRLTSMQGFEGCVSLEELYLSHNGIEKMEGLSTLVNLHVLDVSSNKLTSVDDIQNLTKLEDLWLNDNRIESL GSINDAVAGSREKLTTIYLENNPCAKAPGYCSTLKEIFPNILQIDSNVYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010891 [exp]	0	1
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10012715 [exp]	1.0	0.8846
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10038993 [exp]	2.4	0.8435
AT1G35660			unknown protein		Lus10028705 [exp]	2.4	0.8483
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025276 [exp]	9.4	0.8297
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10020363 [exp]	9.7	0.8386
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	10.4	0.8417
AT5G14790			ARM repeat superfamily protein...		Lus10014533 [exp]	10.5	0.8214
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10027288 [exp]	10.9	0.8305
AT5G58530			Glutaredoxin family protein (....		Lus10017438 [exp]	12.0	0.8086
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038755 [exp]	12.8	0.8157

Compare expression of checked genes

Lus10010891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.