Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21120 386 / 6e-135 Protein of unknown function (DUF803) (.1) AT4G38730 383 / 9e-134 Protein of unknown function (DUF803) (.1) AT1G71900 363 / 2e-125 Protein of unknown function (DUF803) (.1) AT4G13800 356 / 8e-123 Protein of unknown function (DUF803) (.1) AT1G34470 355 / 4e-122 Protein of unknown function (DUF803) (.1) AT3G23870 342 / 2e-117 Protein of unknown function (DUF803) (.1) AT4G09640 340 / 8e-116 Protein of unknown function (DUF803) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012716 [exp] 617 / 0 AT2G21120 444 / 1e-157 Protein of unknown function (DUF803) (.1) Lus10026280 [exp] 378 / 5e-131 AT2G21120 498 / 2e-178 Protein of unknown function (DUF803) (.1) Lus10015480 [exp] 359 / 6e-124 AT1G71900 548 / 0.0 Protein of unknown function (DUF803) (.1) Lus10006072 [exp] 343 / 2e-118 AT1G71900 503 / 0.0 Protein of unknown function (DUF803) (.1) Lus10042393 [exp] 335 / 2e-115 AT4G38730 424 / 2e-150 Protein of unknown function (DUF803) (.1) Lus10022549 [exp] 313 / 7e-106 AT4G13800 408 / 2e-143 Protein of unknown function (DUF803) (.1) Lus10019952 [exp] 302 / 2e-101 AT1G71900 454 / 4e-161 Protein of unknown function (DUF803) (.1) Lus10016636 [exp] 235 / 2e-76 AT3G23870 312 / 2e-106 Protein of unknown function (DUF803) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G305700 [exp] 541 / 0 AT2G21120 442 / 9e-157 Protein of unknown function (DUF803) (.1) Potri.019G001100 [exp] 521 / 0 AT2G21120 433 / 5e-153 Protein of unknown function (DUF803) (.1) Potri.001G253100 [exp] 375 / 2e-130 AT1G34470 379 / 6e-131 Protein of unknown function (DUF803) (.1) Potri.004G168900 [exp] 365 / 1e-126 AT2G21120 488 / 6e-175 Protein of unknown function (DUF803) (.1) Potri.009G047400 [exp] 365 / 2e-126 AT1G34470 414 / 5e-145 Protein of unknown function (DUF803) (.1) Potri.003G009700 [exp] 359 / 6e-124 AT1G71900 463 / 9e-165 Protein of unknown function (DUF803) (.1) Potri.019G084600 [exp] 353 / 7e-122 AT1G71900 423 / 5e-149 Protein of unknown function (DUF803) (.1) Potri.013G114100 [exp] 350 / 2e-120 AT1G71900 439 / 4e-155 Protein of unknown function (DUF803) (.1) Potri.001G318700 [exp] 349 / 2e-120 AT4G13800 379 / 8e-132 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF05653 [flax] [poplar] Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence Show only first row Show all	>Lus10010893 pacid=23172506 polypeptide=Lus10010893 locus=Lus10010893.g ID=Lus10010893.BGIv1.0 annot-version=v1.0 ATGTACTCGAGCAATTTGAAAGGTTTCGTGCTGGCTGTTGTGTCCAGTGGCTTCATCGGCTCCAGCTTCATCTTCAAGAAGAAAGGTCTCCGTAGGGCTG GGGTCAACGGCCCTCGCGCAGGCGTTGGAGGGTATGGTTATTTGCGGGAGCCTTTGTGGTGGATCGGAATGATTACTATGATTGTTGGAGAGATCGCTAA CTTCATAGCCTACATTTATGCTCCTGCTGTTCTTGTCACACCACTAGGAGCTTTGAGCATCATTGTAAGTGCTGTATTGGCACATTTCTTACTAAGAGAG AAACTCCAAAAGATGGGTGTATTGGGTTGCCTTCTCTGCATAGTAGGTTCCACAGTAATTGTGCTGCATGCTCCTCAAGAACGATCTATTAACTCCGTTG AAGAAATATGGGGACTAGCTACCCAACCAGCATTTCTTATCTATACGGGTTCTGCTATTGCTGTGGCGTTGGTCTTGATTTTCTTCTGTGCACCACGTTA TGGCCAAACCAACATCATGATCTATTTAGGAATATGCTCCATTGTGGGTTCATTGACGGTTATGAGTGTAAAGGCCATAGGCATTGCAATAAAGCTAACA TTCGACGGTGTAAACCAAGCCACATACTTTCAGACGTGGGTTTTCACAATGGCATTAGACACCTTCAACACAGCTGTGGTCTCTCCCATCTATTACGCCA TGTTCACATCTTTCACAATTTTAGCCAGTGCAATAATGTTCAAGGATTATTCCGGCCAAAGTGCAAGCAGTATTGCATCAGAACTTTGCGGGTTCATAAC CGTGTTGTCCGGGACCGCAGTGCTGCACAGTACAAGAGAACCGGATCCGCCTTCGACAGCAGATCATTACACGCCGTTATCCCCAAGAGTATCGTGGTAC ATCCAAGGTAACAGGGAGGTACGGAAGCAGAAGGATGACGATGGCACAGCTCCGAATTTCATCACAATTTTGAAGCAGGATCACTTCAGTTGA
AA sequence Show only first row Show all	>Lus10010893 pacid=23172506 polypeptide=Lus10010893 locus=Lus10010893.g ID=Lus10010893.BGIv1.0 annot-version=v1.0 MYSSNLKGFVLAVVSSGFIGSSFIFKKKGLRRAGVNGPRAGVGGYGYLREPLWWIGMITMIVGEIANFIAYIYAPAVLVTPLGALSIIVSAVLAHFLLRE KLQKMGVLGCLLCIVGSTVIVLHAPQERSINSVEEIWGLATQPAFLIYTGSAIAVALVLIFFCAPRYGQTNIMIYLGICSIVGSLTVMSVKAIGIAIKLT FDGVNQATYFQTWVFTMALDTFNTAVVSPIYYAMFTSFTILASAIMFKDYSGQSASSIASELCGFITVLSGTAVLHSTREPDPPSTADHYTPLSPRVSWY IQGNREVRKQKDDDGTAPNFITILKQDHFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21120			Protein of unknown function (D...		Lus10010893 [exp]	0	1
AT2G21120			Protein of unknown function (D...		Lus10012716 [exp]	1.0	0.9363
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10003215 [exp]	5.5	0.9088
AT1G48960			Adenine nucleotide alpha hydro...		Lus10038945 [exp]	6.9	0.9005
AT2G37840			Protein kinase superfamily pro...		Lus10022593 [exp]	7.2	0.8977
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	8.5	0.9050
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10029495 [exp]	8.7	0.9166
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10017199 [exp]	9.6	0.8880
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	10.2	0.9087
AT4G37030			unknown protein		Lus10011021 [exp]	11.3	0.8933
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10017318 [exp]	15.0	0.8973

Compare expression of checked genes

Lus10010893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.