Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24290 731 / 0 MAC/Perforin domain-containing protein (.1.2) AT1G28380 533 / 0 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 435 / 1e-145 MAC/Perforin domain-containing protein (.1) AT1G29690 408 / 6e-136 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012717 [exp] 1148 / 0 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10035789 [exp] 734 / 0 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037363 [exp] 674 / 0 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 561 / 0 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10041285 [exp] 454 / 7e-153 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 453 / 9e-153 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 429 / 4e-144 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 416 / 9e-139 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10025153 [exp] 358 / 1e-115 AT1G29690 595 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G305600 [exp] 853 / 0 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 852 / 0 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.003G006500 [exp] 767 / 0 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.011G057100 [exp] 607 / 0 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.004G047700 [exp] 588 / 0 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.008G136401 [exp] 468 / 1e-158 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 467 / 2e-158 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 446 / 3e-150 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 425 / 9e-143 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 418 / 1e-139 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10010894 pacid=23172491 polypeptide=Lus10010894 locus=Lus10010894.g ID=Lus10010894.BGIv1.0 annot-version=v1.0 ATGGCGGCGACTACTACTACTACTACTTCGGCAAAGAGAGCTGCCGAGGCGGCCGTGCAGGCCATCGGCCAAGGGTTTGATCTCACCGTCGACTTACGCC TCAAGTATTGTAAGCCTCATTCGCTCATCGTCATGGACGACGATCGTAACTCCTTACACTGTCTCTCAATCCCTGTTCCTCCTGGCTTCTCGATTCCCTC CGTTTCTAAATCCATCAAGTGCGATAAAGGCGAGCGCACCAGGTTCAGCTCCGATCTCCTCTCTTTTCAACAGATGTCTGAGCAGTTTAATCAGGATTTA TCGCTATCTGGCAAAATTCCATCTGGAGCTTTTAATGCTGCCTTCGAATTCACTGGTGTCTGGCAAAAAGACGCTGCCTCTACGAAATCCCTAGCTTTTG ATGGGGTATCTATCACGCTTTATAGCATTGCTCTTCAGAAATCGCAGGTTCTACTTTCTGATCATATCAAGCAAGCTGTTCCTTCATCTTGGGACCCTGA TGCATTAGCTAGATTTATTGAGAAATACGGTACTCACCTTATAGTTGGTGTCAAAATGGGAGGGAAGGATGTTGTCTACGTGAAACAGCAGCATGGATCG CCTCTCCAGCCTGTTGATGTGCAGAAGAATTTGAAAGGCCTGGCAGATAAAATCTTGACAGATGGTACTGGCCAGACTGGTTTGAAGCAAGACAGAAAGT TTGTGAAGGAGAACGGTCTGGCGTATATGAATCACTTTGCTGCCAACTCTTATTCCACTGATGAGGATTCAAAGTTCATCCACAAGAGAATAGGTGGCTT GGATAAAACCCTACCCCACAGTGATTGGGCTCACACGGTTCAGTTTGAGCCTGAAGTTATATCAATGTCATTTGTCCCCATTACATCCCTACTGAGTGGA ATTGATGGTAGCGGGTTCTTGACACATGCCATTAATCTCTATATTCGCTATAAGCCACCAATAGAAGAATTACATCAATTCCTGGAGTTTCAGCTTCCCA AGCATTGGGCACCCGTATTTGGCGAGCTCGCCCTCGGTCCTAATAAAAAGCACCAAGGCAATGCGTCACTGCAGTTCAGCTTCATGGGCCCTAGACTTTA TGTTAACACAATGCCGGTATACGTGGACTACAAGCCAGTTACAGGTCTCCGACTATACTTGGAAGGAAAACGAAGCAACTGTTTAGCAATCCACTTACAA CACCTTTCCTCATCACCCAAGACATTCCAACTCGAAAACAAATCGAAGGGCAACCTCACCTCCGCATCATCAGCCTCAGACCGCAGGTACTACGAAAAAG TCCAGTGGAAGAGCTTCTCCCACGTATGCACAGCCCCTGTTGAGAGCGAAGACGAACTCTCGATCGTGACCGGAGCCCACTTCGAAGTCGGCGAGTCGGG TCTAAAGAACGTCCTCTTTCTTAGGCTCCATTTCTCCAGAGTCATCGGAGCCAGCGCCACGAGGAAAGTCGAGTGGGACGGCTCCCCCGCCAGTAACCAG AAGTCGGGGATCATATCGGCATTGATCAGCACTCGATTCTCGAGCGCTCAGAAGGCCCCTGCTGCTCCGAGCCCGAGTGAAGTCCAGCTGAACTCGGCTG TGTATCCGGGTGGCCCTCCCGTTTCGACTCAGGCTCCGAAGCTGCTCAAGTACGTAGACACGACCGAGATGACGAGGGGCCCACAGGACACACCGGGATA CTGGGTTGTGTCGGGTGCGAAGCTGAATGTGGAGAAAGGGAAGATCTCTGTGAGAGTGAAGTATTCTCTGCTGACTTTGGTTTTGCCTGATGATGAAGAA GAGGAGATCAGTTAA
AA sequence Show only first row Show all	>Lus10010894 pacid=23172491 polypeptide=Lus10010894 locus=Lus10010894.g ID=Lus10010894.BGIv1.0 annot-version=v1.0 MAATTTTTTSAKRAAEAAVQAIGQGFDLTVDLRLKYCKPHSLIVMDDDRNSLHCLSIPVPPGFSIPSVSKSIKCDKGERTRFSSDLLSFQQMSEQFNQDL SLSGKIPSGAFNAAFEFTGVWQKDAASTKSLAFDGVSITLYSIALQKSQVLLSDHIKQAVPSSWDPDALARFIEKYGTHLIVGVKMGGKDVVYVKQQHGS PLQPVDVQKNLKGLADKILTDGTGQTGLKQDRKFVKENGLAYMNHFAANSYSTDEDSKFIHKRIGGLDKTLPHSDWAHTVQFEPEVISMSFVPITSLLSG IDGSGFLTHAINLYIRYKPPIEELHQFLEFQLPKHWAPVFGELALGPNKKHQGNASLQFSFMGPRLYVNTMPVYVDYKPVTGLRLYLEGKRSNCLAIHLQ HLSSSPKTFQLENKSKGNLTSASSASDRRYYEKVQWKSFSHVCTAPVESEDELSIVTGAHFEVGESGLKNVLFLRLHFSRVIGASATRKVEWDGSPASNQ KSGIISALISTRFSSAQKAPAAPSPSEVQLNSAVYPGGPPVSTQAPKLLKYVDTTEMTRGPQDTPGYWVVSGAKLNVEKGKISVRVKYSLLTLVLPDDEE EEIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24290			MAC/Perforin domain-containing...		Lus10010894 [exp]	0	1
AT4G24290			MAC/Perforin domain-containing...		Lus10012717 [exp]	1.0	0.9620
AT4G36945			PLC-like phosphodiesterases su...		Lus10000092 [exp]	1.4	0.9490
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10032574 [exp]	5.7	0.9101
AT1G11050			Protein kinase superfamily pro...		Lus10028549 [exp]	5.9	0.9322
AT3G60800			DHHC-type zinc finger family p...		Lus10024561 [exp]	6.5	0.8938
AT4G25030			unknown protein		Lus10036513 [exp]	6.9	0.9256
AT5G53330			Ubiquitin-associated/translati...		Lus10038829 [exp]	7.1	0.9096
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10017509 [exp]	8.1	0.9322
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	10.7	0.9053
AT1G03070			Bax inhibitor-1 family protein...		Lus10022085 [exp]	12.0	0.9141

Compare expression of checked genes

Lus10010894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.