Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73280 424 / 3e-146 SCPL3 serine carboxypeptidase-like 3 (.1) AT1G73300 420 / 1e-144 SCPL2 serine carboxypeptidase-like 2 (.1) AT5G36180 419 / 2e-144 SCPL1 serine carboxypeptidase-like 1 (.1) AT3G12203 417 / 1e-143 SCPL17 serine carboxypeptidase-like 17 (.1) AT1G73290 412 / 9e-142 SCPL5 serine carboxypeptidase-like 5 (.1) AT1G73270 407 / 2e-139 SCPL6 serine carboxypeptidase-like 6 (.1) AT2G22980 401 / 2e-137 SCPL13 serine carboxypeptidase-like 13 (.1.2.3.4) AT1G73310 401 / 2e-137 SCPL4 serine carboxypeptidase-like 4 (.1) AT3G10450 400 / 5e-137 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT5G09640 395 / 1e-134 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007732 [exp] 503 / 2e-177 AT3G12203 423 / 7e-146 serine carboxypeptidase-like 17 (.1) Lus10018667 [exp] 526 / 8e-172 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10012718 [exp] 471 / 1e-165 AT1G73300 384 / 2e-131 serine carboxypeptidase-like 2 (.1) Lus10007731 [exp] 459 / 1e-159 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10025859 [exp] 260 / 1e-81 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 254 / 4e-79 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 251 / 5e-78 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 249 / 7e-74 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 227 / 5e-66 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124900 [exp] 459 / 1e-159 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 386 / 4e-131 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G290900 [exp] 380 / 1e-128 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 379 / 8e-128 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G291700 [exp] 351 / 6e-117 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 334 / 2e-111 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 308 / 1e-100 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.019G054300 [exp] 273 / 9e-87 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.014G177500 [exp] 256 / 6e-80 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.012G105500 [exp] 164 / 1e-45 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10010895 pacid=23172524 polypeptide=Lus10010895 locus=Lus10010895.g ID=Lus10010895.BGIv1.0 annot-version=v1.0 ATGGGAAAACAGAGCATCAGCCTCTGGTTTCAACTAGTCTTGCTTCTTCCTCTTCTGTGTCTTGAAGCCTCTGGATCATCAAGCACTCCCGTCATTATAA AGCATCTTCCTGGGCTTCCAGGGCCGCTTCCCTTCTACTTGGAAACTGGGTATGTTGGGGTTGGAGGAGAAGCAGAGAAGGAATCAGTGCAGCTGTTTTA CTACTTTGTTAAGTCAGAGAGGAGCCCTGAAGACGATCCTCTTCTCCTCTGGCTTACCGGCGGCCCTGCCTGCTCTTCCATTTCTGCCCTCGCCTTTGAG AATGGTCCTATTGGCTTCCAAGGATCGGAGTACAATGGTAGCTTGCCAACGTTGGTGCTCAACCCTAATTCCTGGACCAAAGTTTCCAGCATCATATATG TAGACCTGCCGGTTGGTACAGGATTCTCTTACACAACGAATCATTCTGCTCTACGATCATCAGACCATATCCAAGTTTCCCAAGCTGAAGAATTCCTGAG AAAATGGCTAAGGAAACATAGGGAGTTCCTGAAGAATCCACTTTACATTGCTGGAGATTCCTACTCAGGCATCACAATTCCACCGATAGTCCAACGGCTT TCTATTGGAAACGAAAAGGGCATCGAGCCGATGTTGAACTTCAGGGTAAGAACTTCTGTGAACTTAAATGGAAACCCTAGAACTCCTGAGGGATACATAC TTGGAAACCCTATCACTGATTTCGGGTTTCAGGAAAATAGCCAAATTCCGTTTGCACACGGGATGGCACTCATTTCAGACGAACTCTACCAGTGTCTATC AGGGATTAATCAAGGGGGGATACTTGACACTGACTGTGATGCTGGTTTTGCACAGAGAAGAAGAATCCTTATTGATCGACCGAACCATGGTTGCGATACT TATGGTCAACAGCTTTGCACATACTGGGCCAATGATGCTATAGTCCGCAAAGCCCTTCACATAAGAGAGGGTACGGTCGAGGAGTGGGTGAGATGCAACA CTGGGTTGGATTATGACCAAGATATTGGCACTAGTTTTGAGTATCACGTCAACCTTTCAACCAAGGATTATCGTTCATTAATCTACAACGGAGATCATGA CTTTATGGTGCCATTCCTTGGAACGCAAGCTTGGATTCGAGCTCTTAACTATTCGATCGTCGATGATTGGCGTTCTTGGCATGTCGAAGGTCAAGTTGCA GGGTACACAAGAACTTACTCTAATGGAATGACCTTTGTGACTGTGAAGGGTGGAGAACATCTTGCTTTGGAAACCAAGCCAGCAGAGTGCTTTGCTATGT TCAACAGATGGATACACTATGAGCTTCTATAG
AA sequence Show only first row Show all	>Lus10010895 pacid=23172524 polypeptide=Lus10010895 locus=Lus10010895.g ID=Lus10010895.BGIv1.0 annot-version=v1.0 MGKQSISLWFQLVLLLPLLCLEASGSSSTPVIIKHLPGLPGPLPFYLETGYVGVGGEAEKESVQLFYYFVKSERSPEDDPLLLWLTGGPACSSISALAFE NGPIGFQGSEYNGSLPTLVLNPNSWTKVSSIIYVDLPVGTGFSYTTNHSALRSSDHIQVSQAEEFLRKWLRKHREFLKNPLYIAGDSYSGITIPPIVQRL SIGNEKGIEPMLNFRVRTSVNLNGNPRTPEGYILGNPITDFGFQENSQIPFAHGMALISDELYQCLSGINQGGILDTDCDAGFAQRRRILIDRPNHGCDT YGQQLCTYWANDAIVRKALHIREGTVEEWVRCNTGLDYDQDIGTSFEYHVNLSTKDYRSLIYNGDHDFMVPFLGTQAWIRALNYSIVDDWRSWHVEGQVA GYTRTYSNGMTFVTVKGGEHLALETKPAECFAMFNRWIHYELL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10010895 [exp]	0	1
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10027208 [exp]	9.9	0.7312
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	16.0	0.7491
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	16.8	0.7490
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10003311 [exp]	23.8	0.7247
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005967 [exp]	37.8	0.7045
AT5G45840			Leucine-rich repeat protein ki...		Lus10025400 [exp]	38.1	0.6789
AT5G67090			Subtilisin-like serine endopep...		Lus10042644 [exp]	38.8	0.6784
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10041406 [exp]	40.7	0.7402
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	41.3	0.7186
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Lus10011873 [exp]	51.3	0.7232

Compare expression of checked genes

Lus10010895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.