Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47180 523 / 0 ATGOLS1 galactinol synthase 1 (.1) AT1G56600 519 / 0 ATGOLS2 galactinol synthase 2 (.1) AT1G09350 499 / 6e-179 ATGOLS3 galactinol synthase 3 (.1) AT1G60470 474 / 5e-169 ATGOLS4 galactinol synthase 4 (.1) AT4G26250 446 / 5e-158 ATGOLS6 galactinol synthase 6 (.1) AT5G23790 434 / 2e-153 ATGOLS5 galactinol synthase 5 (.1) AT5G30500 432 / 9e-153 GolS10 galactinol synthase 10, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G60450 424 / 3e-149 ATGOLS7 galactinol synthase 7 (.1) AT1G77130 87 / 1e-18 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT3G18660 84 / 2e-17 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031434 [exp] 625 / 0 AT2G47180 543 / 0.0 galactinol synthase 1 (.1) Lus10029145 [exp] 463 / 3e-164 AT2G47180 493 / 1e-176 galactinol synthase 1 (.1) Lus10013020 [exp] 325 / 5e-110 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10018922 [exp] 89 / 3e-19 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 89 / 5e-19 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10033485 [exp] 84 / 1e-17 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10029932 [exp] 83 / 3e-17 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10021731 [exp] 81 / 2e-16 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10031507 [exp] 81 / 2e-16 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G006800 [exp] 536 / 0 AT1G56600 539 / 0.0 galactinol synthase 2 (.1) Potri.014G116800 [exp] 529 / 0 AT2G47180 568 / 0.0 galactinol synthase 1 (.1) Potri.013G005800 [exp] 528 / 0 AT1G56600 543 / 0.0 galactinol synthase 2 (.1) Potri.002G191600 [exp] 526 / 0 AT2G47180 565 / 0.0 galactinol synthase 1 (.1) Potri.010G150400 [exp] 494 / 3e-177 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.008G101000 [exp] 479 / 2e-171 AT2G47180 507 / 0.0 galactinol synthase 1 (.1) Potri.008G189400 [exp] 465 / 2e-165 AT1G60470 545 / 0.0 galactinol synthase 4 (.1) Potri.010G042000 [exp] 463 / 8e-165 AT1G60470 534 / 0.0 galactinol synthase 4 (.1) Potri.013G005900 [exp] 353 / 1e-122 AT1G56600 363 / 2e-127 galactinol synthase 2 (.1) Potri.007G107200 [exp] 87 / 2e-18 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10010897 pacid=23172497 polypeptide=Lus10010897 locus=Lus10010897.g ID=Lus10010897.BGIv1.0 annot-version=v1.0 ATGGCACCTGAGATCCCACCAACTGCCAACAACGCCGCACTGGCCACTAAGGCAGCCGCTGCCGCCGGCCTGTTGAAGCAGCCGAGCATATCGAAGTGCG CCTACGTGACTTTTCTGGCTGGAAACGGCGACTACGTCAAAGGAGTCGTCGGGCTGGCTAAGGGGCTGAGGAAAGTGAAGAGCAAGTACCCTTTAGTAGT TGCTATCTTGCCGGACGTCCCCGAGGAGCACCGCCGGATCCTGGTTTCTCAAGGGTGTATCGTCCGGGAGATCGAACCGGTTTACCCGCCCGAAAACCAG ACCCAGTTCGCCATGGCGTACTACGTCATCAACTACTCCAAGCTCCGTATTTGGAAGTTTGTGGAGTACAGCAAGGTGATATACTTGGACGGGGACATCC AAGTCTTCTCAAACATTGACCACCTCTTTGACCTCCCGGACGGCCGTTTCTACGCCGTCATGGACTGCTTCTGCGAGAAGACATGGAGCCACACTCCACA GTACAAAATCGGTTACTGCCAGCAAAGGCCTGAAAAAGTCCAATGGGCCTCAAACTTAGGCCCAAAGCCTGCCCTCTACTTCAACGCCGGAATGTTCGTC TACGAGCCCAGCTTATCAATCTACGACAACCTTCTCGAAACCCTCAAAGTCGCCCCCACGACGCCGTTTGCGGAGCAGGATTTCCTCAACTCGTTCTTCA AGGACATCTACAGGCCGATCCCGTCGAATTACAATCTTGTCCTCGCCATGCTGTGGCGCCACCCGGAGAATGTCGAGCTGGAGAAGGTCAAAGTCGTCCA TTACTGCGCTGCCGGGTCGAAGCCGTGGAGGTATACTGGGGAGGAGGAGAACATGGACAGGGAGGATATTAAGATGCTGGTTAAGAAGTGGTGGGATGTT TATGGTGACGAGTCGTTGGATTACTGGAACTGGGTTGAGGCGACGGAGGCTGCGGCCGCCCCCAATGCGGCGGAGGCGGTGAAGATGCAGCCGTTTCTGG CGGCGCTGTCGGAGGCGGGGGTTGTTCATTACGTCACGGCGCCGTCTGCTGCTTAA
AA sequence Show only first row Show all	>Lus10010897 pacid=23172497 polypeptide=Lus10010897 locus=Lus10010897.g ID=Lus10010897.BGIv1.0 annot-version=v1.0 MAPEIPPTANNAALATKAAAAAGLLKQPSISKCAYVTFLAGNGDYVKGVVGLAKGLRKVKSKYPLVVAILPDVPEEHRRILVSQGCIVREIEPVYPPENQ TQFAMAYYVINYSKLRIWKFVEYSKVIYLDGDIQVFSNIDHLFDLPDGRFYAVMDCFCEKTWSHTPQYKIGYCQQRPEKVQWASNLGPKPALYFNAGMFV YEPSLSIYDNLLETLKVAPTTPFAEQDFLNSFFKDIYRPIPSNYNLVLAMLWRHPENVELEKVKVVHYCAAGSKPWRYTGEEENMDREDIKMLVKKWWDV YGDESLDYWNWVEATEAAAAPNAAEAVKMQPFLAALSEAGVVHYVTAPSAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10010897 [exp]	0	1
AT5G35320			unknown protein		Lus10011963 [exp]	1.0	0.9627
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10035781 [exp]	4.9	0.9303
AT1G44414			unknown protein		Lus10018166 [exp]	6.0	0.9242
AT2G20560			DNAJ heat shock family protein...		Lus10015402 [exp]	6.6	0.9311
AT2G20560			DNAJ heat shock family protein...		Lus10013981 [exp]	7.1	0.9286
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10002319 [exp]	7.2	0.9300
AT1G53540			HSP20-like chaperones superfam...		Lus10040830 [exp]	8.4	0.9117
AT1G53540			HSP20-like chaperones superfam...		Lus10009085 [exp]	11.2	0.9214
AT5G07330			unknown protein		Lus10042036 [exp]	11.4	0.9036
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026099 [exp]	11.7	0.9159

Compare expression of checked genes

Lus10010897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.