Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09330 276 / 9e-96 ECHIDNA, ECH unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031433 [exp] 322 / 1e-113 AT1G09330 315 / 6e-111 unknown protein Lus10010063 [exp] 261 / 3e-90 AT1G09330 308 / 1e-108 unknown protein Lus10004514 [exp] 224 / 1e-74 AT1G09330 269 / 2e-92 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010400 [exp] 294 / 3e-103 AT1G09330 328 / 2e-116 unknown protein Potri.013G006250 [exp] 290 / 2e-101 AT1G09330 330 / 2e-117 unknown protein Potri.002G191700 [exp] 201 / 8e-67 AT1G09330 240 / 6e-82 unknown protein Potri.014G116900 [exp] 129 / 4e-38 AT1G09330 158 / 1e-49 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05832 [flax] [poplar] DUF846 Eukaryotic protein of unknown function (DUF846)
Representative CDS sequence Show only first row Show all	>Lus10010898 pacid=23172531 polypeptide=Lus10010898 locus=Lus10010898.g ID=Lus10010898.BGIv1.0 annot-version=v1.0 ATGGATCTCGTTAATCCGCCTCCTGAAGAGAATTATGCAAACCCGAGAACTTGCCTCTTTCATGTTCTCTTCAAGGCTGCCTCGTTGGCTTTCTACATAC TGTCAGCCCTCTTCATCAACAATTTCGTCATAATCTTCGTGGTCACAGTTCTTCTTGCTGCGCTCGACTTCTGGGTGGTCAAGAATGTCAGCGGCCGGAT CCTTGTAGGCCTCAGGTGGTGGAATGAGATAAACGACCTCGGCGAGAGTGTCTGGCGATTCGAATCACTTGACCAAGAGTCATTAGCCCGTATGAACAAG AAAGACGCTTGGCTATTCTGGTGGACCCTCTATCTCACTGCGGTTGCGTGGGTTTTCCTTGGGATCTTCTCTGTGATAAGGTTCCAAGCGGATTACTGCC TCATTACAGGGGTTTGTATGACTCTAAGTATTGCAAACATCATCGGCTTCACCAAGTGCCGCAAAGATGCAAAGAGGCAGCTCCAGCAGTTTGCGACGCA GACGATTACAAGTCGAGTATCGTCCACCATACAATCGGCATTCAGCGTTGTGTGA
AA sequence Show only first row Show all	>Lus10010898 pacid=23172531 polypeptide=Lus10010898 locus=Lus10010898.g ID=Lus10010898.BGIv1.0 annot-version=v1.0 MDLVNPPPEENYANPRTCLFHVLFKAASLAFYILSALFINNFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWRFESLDQESLARMNK KDAWLFWWTLYLTAVAWVFLGIFSVIRFQADYCLITGVCMTLSIANIIGFTKCRKDAKRQLQQFATQTITSRVSSTIQSAFSVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010898 [exp]	0	1
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10018088 [exp]	7.7	0.8303
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000793 [exp]	11.7	0.8023
AT5G25940			early nodulin-related (.1)		Lus10043290 [exp]	11.7	0.7131
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10036179 [exp]	47.7	0.7295
AT3G59330			Eukaryotic protein of unknown ...		Lus10002279 [exp]	83.7	0.6981
AT2G19580		TET2	tetraspanin2 (.1)		Lus10007998 [exp]	97.5	0.6942
AT5G51220			ubiquinol-cytochrome C chapero...		Lus10032494 [exp]	105.2	0.6927
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	115.9	0.6761
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10039704 [exp]	144.4	0.6503
					Lus10000528 [exp]	160.5	0.6406

Compare expression of checked genes

Lus10010898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.