Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56590 705 / 0 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) AT1G60780 176 / 2e-50 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 169 / 6e-48 Clathrin adaptor complexes medium subunit family protein (.1) AT5G46630 150 / 6e-41 Clathrin adaptor complexes medium subunit family protein (.1.2) AT4G24550 137 / 8e-36 Clathrin adaptor complexes medium subunit family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031432 [exp] 843 / 0 AT1G56590 705 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042083 [exp] 174 / 1e-49 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10004626 [exp] 173 / 1e-49 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10026688 [exp] 166 / 1e-46 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10040086 [exp] 156 / 5e-43 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10018088 [exp] 160 / 6e-43 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10030961 [exp] 144 / 2e-38 AT5G46630 837 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10000107 [exp] 140 / 6e-38 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10024548 [exp] 130 / 3e-33 AT4G24550 804 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010600 [exp] 771 / 0 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.013G006400 [exp] 766 / 0 AT1G56590 712 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.008G187600 [exp] 177 / 4e-51 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.010G044700 [exp] 177 / 7e-51 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.003G090800 [exp] 153 / 5e-42 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 149 / 1e-40 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.002G105100 [exp] 131 / 7e-34 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.010G028600 [exp] 43 / 0.0004 AT2G20790 790 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10010899 pacid=23172461 polypeptide=Lus10010899 locus=Lus10010899.g ID=Lus10010899.BGIv1.0 annot-version=v1.0 ATGTTGCAGTGTATCTTCCTCCTCTCTGATTCCGGAGAGGTGATGCTGGAGAAGCAGCTGACTGGTAATCAAGTGGACAGATCCATCTGTGCCTGGTTCT GGGATCAACTCCTCTCCCATGGCGATTCATTTAAGCAACAACCGGTCATTGCTTCTCCAACACACTACCTGTTCCAAGTCGTTCGTGAAGGGATCACTTT CCTGGCTTGCACACAAGTTGAGATGCCTCCTTTGATGGCTATCGAGTTCCTCGGCAGGGTAGCTGACGCCCTCTCTGATTACCTTGAAGGCTTGAATGAA GATGTCTTAAAGGATAACTTCATAATTGTCTATGAGTTGTTGGATGAGATGATAGATAATGGCTTCCCTTTGACAACTGAACCTAACATACTCAGAGAGA TGATAGCACCACCGAACATCGTTAGCAAGATGTTGAGTGTCGTGACCGGTAATAGCTCGAACGTGAGTGAAACTCTTCCGGGAGCTACCTCGTCTTGCGT CCCTTGGAGGACGACTGACATAAAGTATGCTAATAATGAAGTATATGTCGATCTCGTTGAGGAAATGGATGCCATTATAAACAGGGATGGCGTCTTGGTA AAATGCGAGGTCTATGGAGAAGTCCAAGTGAATTCGCATATTACTGGCGTTCCTGATTTGACTCTTTCCTTTGTAAATCCTTCCATGCTGGACGATGTGA GATTTCATCCTTGTGTCCGGTATCGGCCTTGGGAAGCAAGCCAAATACTGTCTTTCGTCCCTCCTGATGGACAGTTCAAGCTAATGAGTTACAGGATACG GAAGTTGAAAAGCATCCCGCTCTATGTGAAGCCACAGATTACATCAGATGGCGGCACATGTCGCATCAGTGTGATGGTCGGAATCAGAAACGATCCTGGA AAGGCTATCGACTCCATATCGGTTCAGTTCCAGCTGCCTTCTTGTGTGTTGTCCTCTGATCTATCTGCAAATCATGGAGTGGTGAATGTCCTCTCCAATA AGACGTGTGTATGGTCGATCGATCGAATACCGAAAGATCGAGCTCCTTCATTATCCGGAACGCTAGCGCTCGAGAGCGGCTTGGATCGTCTACACGTCTT CCCCACATTTCAAGTGGGATTCAGAATACAAGGCGTCGCCCTTTCAGGCCTGCAGATAGATAGATTGGAGCTCAAGGTTATACCAAACCGTCTGTACAAA GGTTTTCGAGCTCTGACTCGAGGTGGACGATACGAAGTGAGATCGTAG
AA sequence Show only first row Show all	>Lus10010899 pacid=23172461 polypeptide=Lus10010899 locus=Lus10010899.g ID=Lus10010899.BGIv1.0 annot-version=v1.0 MLQCIFLLSDSGEVMLEKQLTGNQVDRSICAWFWDQLLSHGDSFKQQPVIASPTHYLFQVVREGITFLACTQVEMPPLMAIEFLGRVADALSDYLEGLNE DVLKDNFIIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSETLPGATSSCVPWRTTDIKYANNEVYVDLVEEMDAIINRDGVLV KCEVYGEVQVNSHITGVPDLTLSFVNPSMLDDVRFHPCVRYRPWEASQILSFVPPDGQFKLMSYRIRKLKSIPLYVKPQITSDGGTCRISVMVGIRNDPG KAIDSISVQFQLPSCVLSSDLSANHGVVNVLSNKTCVWSIDRIPKDRAPSLSGTLALESGLDRLHVFPTFQVGFRIQGVALSGLQIDRLELKVIPNRLYK GFRALTRGGRYEVRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10010899 [exp]	0	1
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10033464 [exp]	6.1	0.8740
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	9.7	0.8689
AT1G20770			unknown protein		Lus10013217 [exp]	11.7	0.8674
AT1G28410			unknown protein		Lus10015403 [exp]	14.3	0.8545
AT4G17510		UCH3	ubiquitin C-terminal hydrolase...		Lus10026940 [exp]	14.5	0.8558
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Lus10017985 [exp]	22.8	0.8302
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	23.4	0.8595
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	24.1	0.8178
AT5G18540			unknown protein		Lus10002878 [exp]	29.4	0.8322
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	29.7	0.8471

Compare expression of checked genes

Lus10010899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.