Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56560 937 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G05820 923 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1) AT3G06500 865 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT5G22510 764 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT4G09510 577 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G35580 575 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT1G22650 574 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT4G34860 572 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT1G72000 560 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031431 [exp] 1306 / 0 AT1G56560 936 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10017095 [exp] 910 / 0 AT3G06500 933 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10037817 [exp] 910 / 0 AT3G06500 927 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10043375 [exp] 775 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 768 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10034525 [exp] 583 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10033144 [exp] 580 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10014824 [exp] 573 / 0 AT4G09510 987 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10006078 [exp] 573 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010800 [exp] 1000 / 0 AT1G56560 946 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.013G006600 [exp] 998 / 0 AT1G56560 945 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.008G101500 [exp] 923 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.008G024100 [exp] 766 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 753 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G186500 [exp] 745 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G167500 [exp] 576 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.009G129000 [exp] 574 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.005G239400 [exp] 568 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.013G110800 [exp] 567 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10010900 pacid=23172518 polypeptide=Lus10010900 locus=Lus10010900.g ID=Lus10010900.BGIv1.0 annot-version=v1.0 ATGAACGCTCTGCGCTTCCTCGGCCGTGCCACAGCAATGAATCCCTCTTCCAGATTCACCACCTCCTTCACCCGCAATCTCAAATCGACCCGCTTGAGCT TCGAGCGAACCAGCCACATCAATATCGGCCGAACCAACACAATCAGCCATGGCTGTAACCAAATTAGGGTTGCGCCGTTCACGACGACGGTTCTCCACCG TTATCCGACGTCGTTTCTGCATAAAGACCGTTCCTTGTTCGCCGCCGTCGCGAACCTTTCGTCCTGGGTGAGGCAGCAGCACCACTCGACGTCGGTGGAG ACGAGGGTGAACGACAGCAATTTCGAGAGGATCTACGTCCAGAATGGGATTGTTGATAAGCCGTTGGTTGTCGAGAGGATTGACATCGACGAGAACATAC GAGGAGGAGGAGGGGATGTTGTTGAGAAAGTTTCCGATGAGGTTGGTGGTATTGAGGTTGCTGCGGGGAAGAATGTTCGGGAAGAAACGGATTTGGAGAA AGAGGCGTGGAAGCTGTTGAATGATTCCGTGGTTACTTATTGTGGGAGTCCTGTTGGTACTATGGCTGCTAATGATCCTGGAGATACCATGCCTTTGAAT TATGATCAGGTTTTCATTCGTGATTTCGTGCCTTCTGCTCTTGCTTTCTTGCTCAGAGGTGAAGGAGAGATCGTCAGGAACTTCCTGCTCCATAATCTGC AGTTGCAGAGCTGGGAGAAGACAGTAGATTGCTATAGCCCGGGTCAAGGCCTAATGCCTGCTAGTTTCAAGGTCAGAACAGTGCCTCTTGATGGTAACAA ATTTGAAGAGGTTCTTGATCCGGATTTCGGCGAATCAGCTATCGGACGGGTTGCCCCCGTGGACTCGGGGTTGTGGTGGGTGATTTTGTTGAAGGCGTAC GGGAGAATCACGGGTGATTATACGTTGCAAGAGAGGGTTGATGTGCAGACAGGCATCAAGCTAATCTTGAACTTGTGCTTGGCCGATGGTTTCGATATGT TCCCTACTCTATTAGTCACCGATGGTTCCTGCATGATCGATCGACGGATGGGTATTCATGGCCATCCTCTTGAAATCCAGGCATTGTTCTACTCTGCGTT ACGAAGTGGTCGCGAGATGCTTGCTGTAACCGATGGTTCGAAGAATCTGGTAAGGGCGATAAACAACAGACTCAGTGCCCTATCCTTCCACATTAGGGAG TATTACTGGGTGGACATGAAAAAGATCAATGAGATCTACAGGTACAAAACAGAAGAGTATTCAATGGACGCCACGAATAAGTTCAACATCTACCCTGAAC AAATCCCACACTGGCTTATGGATTGGATTCCGGAGTCAGGCGGGTATCTCATTGGCAACTTGCAGCCTGCTCACATGGACTTCAGATTCTTCACCTTAGG GAATCTTTGGTCCGTAATTTCGTCCTTGGGTACCCCGAAACAGAACGAAGCTATTCTGAACATGATTGATGAGAAATGGGATGATATAGTTGGAGATATG CCTCTTAAGATATGTTTCCCTGCTATTGAGAACGAGGAATGGCGTATCGTCACCGGGAGTGACCCTAAGAACACGCCTTGGTCATATCACAATGGTGGAT CATGGCCAACCCTTCTCTGGCAGTTCACATTGGCATGCATCAAGATGGGCAAAATCGAACTAGCACAGAAGGCAGTCAGCATGGCTGAGGCGAGGCTCGG AGCAGACAAGTGGCCCGAATACTACGACACCCGAAGGGGGAAATTCATCGGAAAGCAAGCTCGACTCTACCAGACTTGGACCATCGCTGGATTCCTGACA TCCAAAATACTCCTCGAAAATCCAGAGAAGGCTTCTCTTTTGTTCTGGGAGGAAGACTACGAACTCCTCGAGACTTGCGTCTGTGCTTTGAACAAGACTG GTCGCAAGAAATGCTCCCGAGTAGCTGCCAAGTCCCAGATTCTCGTCTAG
AA sequence Show only first row Show all	>Lus10010900 pacid=23172518 polypeptide=Lus10010900 locus=Lus10010900.g ID=Lus10010900.BGIv1.0 annot-version=v1.0 MNALRFLGRATAMNPSSRFTTSFTRNLKSTRLSFERTSHINIGRTNTISHGCNQIRVAPFTTTVLHRYPTSFLHKDRSLFAAVANLSSWVRQQHHSTSVE TRVNDSNFERIYVQNGIVDKPLVVERIDIDENIRGGGGDVVEKVSDEVGGIEVAAGKNVREETDLEKEAWKLLNDSVVTYCGSPVGTMAANDPGDTMPLN YDQVFIRDFVPSALAFLLRGEGEIVRNFLLHNLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDGNKFEEVLDPDFGESAIGRVAPVDSGLWWVILLKAY GRITGDYTLQERVDVQTGIKLILNLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRSGREMLAVTDGSKNLVRAINNRLSALSFHIRE YYWVDMKKINEIYRYKTEEYSMDATNKFNIYPEQIPHWLMDWIPESGGYLIGNLQPAHMDFRFFTLGNLWSVISSLGTPKQNEAILNMIDEKWDDIVGDM PLKICFPAIENEEWRIVTGSDPKNTPWSYHNGGSWPTLLWQFTLACIKMGKIELAQKAVSMAEARLGADKWPEYYDTRRGKFIGKQARLYQTWTIAGFLT SKILLENPEKASLLFWEEDYELLETCVCALNKTGRKKCSRVAAKSQILV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Lus10010900 [exp]	0	1
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10002288 [exp]	8.8	0.6900
AT5G65540			unknown protein		Lus10035950 [exp]	11.9	0.6871
AT1G69630			F-box/RNI-like superfamily pro...		Lus10037440 [exp]	14.3	0.6654
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10010934 [exp]	14.4	0.6426
AT1G78930			Mitochondrial transcription te...		Lus10037301 [exp]	24.9	0.6264
AT1G32090			early-responsive to dehydratio...		Lus10002133 [exp]	32.5	0.6533
AT3G07565			Protein of unknown function (D...		Lus10025582 [exp]	33.8	0.6360
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10037719 [exp]	41.6	0.6382
AT5G19950			Domain of unknown function (DU...		Lus10043254 [exp]	45.9	0.6519
AT1G68730			Zim17-type zinc finger protein...		Lus10034401 [exp]	49.6	0.5771

Compare expression of checked genes

Lus10010900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.