Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 358 / 2e-117 SLO1 SLOW GROWTH 1 (.1) AT5G06540 354 / 1e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 344 / 7e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 335 / 6e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 335 / 1e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 335 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 331 / 1e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31430 329 / 1e-107 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G29760 333 / 2e-107 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031430 [exp] 760 / 0 AT5G06540 350 / 1e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004052 [exp] 379 / 4e-126 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002288 [exp] 371 / 3e-123 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018223 [exp] 362 / 2e-118 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 361 / 5e-118 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 356 / 3e-117 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 354 / 2e-116 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 352 / 6e-116 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 344 / 7e-113 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011000 [exp] 651 / 0 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 388 / 1e-128 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 385 / 1e-128 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 381 / 1e-126 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.006G245300 [exp] 380 / 3e-124 AT3G22690 570 / 0.0 unknown protein Potri.003G088600 [exp] 375 / 4e-124 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G202600 [exp] 366 / 2e-122 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G086200 [exp] 365 / 8e-120 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 360 / 1e-117 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 357 / 1e-117 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010901 pacid=23172528 polypeptide=Lus10010901 locus=Lus10010901.g ID=Lus10010901.BGIv1.0 annot-version=v1.0 ATGTCCAACAGAGACATGGTTTCATGGAGCGCGTTGATATCTTGTTACGAGCAGAACGAAATGTACGAGGAAGCCTTGAAGAAGTTTAACGAGATGGTGT TTAATGGAGTTACGGTGGATGAGATCGTCCTGATCAGTGCTCTTTCAGCTTGTGCTCATTCCATGGCAGTTAAGATGGGGAAATTGATCCATGCTTTGGC TATCAAAGTTGGGATTGATCTATACGTTAACCTTCAAAACGCCTTGATTCACATGTATTCGGTCTGTGGCGAGTTAGGTGCTGCTGAGAAGTTGTTTATC CATGGCTGCTGCTTGGACCTAATCTCTTGGAACTCTATGATTTCAGGCTACTTGAAATGCGGGGAGATTGACAAGGCTAGGAGCTTATTCGATTCGATGC CGCGAAGGGATACCGTGTCATGGAGTGTTATGATATCTGGGTATGCTCAACATGATAGGTTTGCCGATGCATTGGCATTGTCCCAGGATATGCTTGATGA TGGTATTCAGCCTGATGACACCATTTTAGTAAGCGCGATCTCGGCTTGTACCCACTTGTCGGCCCTCGATCGAGGGGCGTGGATCCATGCTTATATAAGG AAGAAGAAGCTGAAGATCAATGTCATTCTTGGGACGACCCTTATTGACATGCACATGAAATTCGGCTCGGTACAGAATGCAATGGAGGTTTTCGACACAA TGGAAGAGAAGAAAGGGGTTTCGACTTGGAATGCTCTGATTCTCGGCTTGGCAATGAATGGTTCGGTGAAGGAATCACTACAGACTTTTTCCGAAATGAA AGAATCCGGTATAGTCCCCAATGAAGTAACGTTTCTGGCTGTTCTTGGTGCTTGTAGACACATGGGACTTGTTGAGGAAGGGCGCCGCCATTTCGACTCA ATGATCGAGAATCACAAGATCGAACCTACTGTTAAACACTACGGGTGCATGGTTGATCTTCTTGGACGTGCAGGTAAGCTACAAGAAGCCGAAGAGCTTA TCGCAACCATGCCTATGCCTGCGGACGTCTCCACATGGGGTGCTTTGCTCGGAGCTTGTAAGAAACACGAAGACCACGTGATGGGAGAACGAGTAGGAAG GAAACTAATCGAACTTCAACCGGAGCACGATGGTTTCCATGTACTGCTGTCGAACATATACGCTTCGAGAGGGGATTGGGACGACGCCCGTGATATTAGA GGAACGATGAGGAAGCATAAAGTGACAAAAGTGCCAGGTTGCAGCATGATCGAAGCAAACGGAATAGTTCACGAGTTCTTTGCGGGTGCAGATGAATAA
AA sequence Show only first row Show all	>Lus10010901 pacid=23172528 polypeptide=Lus10010901 locus=Lus10010901.g ID=Lus10010901.BGIv1.0 annot-version=v1.0 MSNRDMVSWSALISCYEQNEMYEEALKKFNEMVFNGVTVDEIVLISALSACAHSMAVKMGKLIHALAIKVGIDLYVNLQNALIHMYSVCGELGAAEKLFI HGCCLDLISWNSMISGYLKCGEIDKARSLFDSMPRRDTVSWSVMISGYAQHDRFADALALSQDMLDDGIQPDDTILVSAISACTHLSALDRGAWIHAYIR KKKLKINVILGTTLIDMHMKFGSVQNAMEVFDTMEEKKGVSTWNALILGLAMNGSVKESLQTFSEMKESGIVPNEVTFLAVLGACRHMGLVEEGRRHFDS MIENHKIEPTVKHYGCMVDLLGRAGKLQEAEELIATMPMPADVSTWGALLGACKKHEDHVMGERVGRKLIELQPEHDGFHVLLSNIYASRGDWDDARDIR GTMRKHKVTKVPGCSMIEANGIVHEFFAGADE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15930			Pentatricopeptide repeat (PPR)...		Lus10010901 [exp]	0	1
AT5G55560			Protein kinase superfamily pro...		Lus10016594 [exp]	13.0	0.7782
AT2G22330		CYP79B3	"cytochrome P450, family 79, s...		Lus10000239 [exp]	14.8	0.7580
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10007862 [exp]	19.8	0.7555
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	29.3	0.7361
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10034716 [exp]	31.4	0.7422
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034279 [exp]	42.4	0.7238
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10026415 [exp]	48.3	0.7225
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Lus10021836 [exp]	56.5	0.7150
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10017668 [exp]	62.6	0.7149
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	64.1	0.6960

Compare expression of checked genes

Lus10010901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.