Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18840 148 / 2e-41 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G08070 142 / 7e-39 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42920 135 / 7e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G06540 127 / 1e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 127 / 2e-33 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 126 / 4e-33 SLO1 SLOW GROWTH 1 (.1) AT1G59720 125 / 5e-33 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26630 123 / 1e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 124 / 2e-32 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030932 [exp] 145 / 6e-40 AT3G29230 318 / 3e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 137 / 5e-37 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 135 / 4e-36 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039703 [exp] 132 / 2e-35 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 132 / 2e-35 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 132 / 3e-35 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017386 [exp] 128 / 5e-35 AT5G08305 357 / 9e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002552 [exp] 125 / 9e-35 AT2G22410 299 / 2e-97 SLOW GROWTH 1 (.1) Lus10026006 [exp] 128 / 1e-33 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011000 [exp] 280 / 2e-89 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G087100 [exp] 160 / 2e-45 AT3G29230 368 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 146 / 3e-40 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G031600 [exp] 146 / 4e-40 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G202600 [exp] 143 / 9e-40 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G065500 [exp] 142 / 8e-39 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G108500 [exp] 140 / 9e-39 AT4G18840 382 / 3e-127 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.007G073100 [exp] 140 / 9e-39 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G207500 [exp] 140 / 2e-38 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G231200 [exp] 136 / 6e-37 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010902 pacid=23172532 polypeptide=Lus10010902 locus=Lus10010902.g ID=Lus10010902.BGIv1.0 annot-version=v1.0 ATGAATCTGATCAACCTCATCAGTCTCTCTGCATCAGTCAACCCATCGACAAGGAATCCTACGTTAACACTCACAATCCTAGACGCCCTTCTGCACCAAT GCCGGAGCTTGAATCATTTCAATCAAATACTATCTCAAACGATCACCACCGGTTTCCTCGTCGCCGATACTTTCGCTGCCGGTAAGCTTCTCAAGTTCTC CACCAGCTCGCCCTTCATCTCCCTGACTCACTCCCACCGCATCTTCACTCACATCACGGATCCGAACGCGTTCGTTTACAACACCATAATGAGAGCTCAT GTGATGAGAAACCATCCTGAGCAAGCTCTGATCTTTTACAAAATGATGCGTGATGATGATCACGTTGGCCCTGATACTTACACGTACCCGATTCTGCTTC AGTCCTGCTCGCAGAGGTTAGCTGAGTTCAAAGGGAGATCGATTCACGGACAAGTTTTGAAAGTCGGGTTTGATTCGGATGTTTATGTGCAGAATACGTT GATTAATCTGTATTCAGTCTGCGGGAAGTTGAGCGATGCCCGCCAGGTGTTTGACGAAAGTCCTATCCTGGACTTGGTATCGTGGAACTCGATGCTGGCC GGGTATATCTCCGGAGAGAATGTGGATGAGGCGAAATCAATATTCAATACAATGCGTAAGAGGAATGTGATCGCTTCCAATTCGATGATTGTGTTGTTTG GGAAGAGTTAA
AA sequence Show only first row Show all	>Lus10010902 pacid=23172532 polypeptide=Lus10010902 locus=Lus10010902.g ID=Lus10010902.BGIv1.0 annot-version=v1.0 MNLINLISLSASVNPSTRNPTLTLTILDALLHQCRSLNHFNQILSQTITTGFLVADTFAAGKLLKFSTSSPFISLTHSHRIFTHITDPNAFVYNTIMRAH VMRNHPEQALIFYKMMRDDDHVGPDTYTYPILLQSCSQRLAEFKGRSIHGQVLKVGFDSDVYVQNTLINLYSVCGKLSDARQVFDESPILDLVSWNSMLA GYISGENVDEAKSIFNTMRKRNVIASNSMIVLFGKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18840			Pentatricopeptide repeat (PPR-...		Lus10010902 [exp]	0	1
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Lus10012118 [exp]	2.8	0.8031
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10006123 [exp]	4.0	0.7933
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	8.8	0.7851
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10037387 [exp]	18.8	0.7474
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	19.1	0.7639
AT5G23200			unknown protein		Lus10010192 [exp]	21.9	0.7545
AT5G46460			Pentatricopeptide repeat (PPR)...		Lus10015256 [exp]	22.4	0.7162
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10013972 [exp]	24.3	0.7797
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	27.2	0.7688
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10010169 [exp]	29.8	0.7488

Compare expression of checked genes

Lus10010902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.