Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09300 641 / 0 Metallopeptidase M24 family protein (.1.2) AT4G29490 129 / 2e-31 Metallopeptidase M24 family protein (.1) AT3G05350 55 / 2e-07 Metallopeptidase M24 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031427 [exp] 955 / 0 AT1G09300 637 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10008578 [exp] 131 / 5e-32 AT4G29490 768 / 0.0 Metallopeptidase M24 family protein (.1) Lus10032694 [exp] 89 / 3e-18 AT4G29490 687 / 0.0 Metallopeptidase M24 family protein (.1) Lus10004479 [exp] 62 / 1e-09 AT3G05350 910 / 0.0 Metallopeptidase M24 family protein (.1) Lus10029923 [exp] 61 / 4e-09 AT3G05350 978 / 0.0 Metallopeptidase M24 family protein (.1) Lus10035045 [exp] 46 / 0.0001 AT1G13270 466 / 3e-165 methionine aminopeptidase 1B (.1.2) Lus10021701 [exp] 45 / 0.0001 AT1G13270 518 / 0.0 methionine aminopeptidase 1B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G007100 [exp] 736 / 0 AT1G09300 643 / 0.0 Metallopeptidase M24 family protein (.1.2) Potri.006G149500 [exp] 116 / 3e-27 AT4G29490 767 / 0.0 Metallopeptidase M24 family protein (.1) Potri.013G021400 [exp] 58 / 2e-08 AT3G05350 1025 / 0.0 Metallopeptidase M24 family protein (.1) Potri.008G117200 [exp] 48 / 1e-05 AT1G13270 531 / 0.0 methionine aminopeptidase 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24 CL0356 [flax] [poplar] AMP_N-like PF05195 [flax] [poplar] AMP_N Aminopeptidase P, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010905 pacid=23172437 polypeptide=Lus10010905 locus=Lus10010905.g ID=Lus10010905.BGIv1.0 annot-version=v1.0 ATGCAGATTCTGTTCCGCAAGTTTCTACGGCCAAGCCCTCCGTTGAGAAGAAATGTCATTGGTTGCTGTGCGTATTCGTCAAGTAAGGTTCTTGATGTCG GACAGCCGACTCCTGCAACTCATCCTCAGTTGTTGAAGGAGGGAGACCTCACACCTGGTATAAGTAGCGATGAGTACATATCCCGGAGGAAGAAGCTGTT GGATCTACTCCCCGAGAACAGTTTAGCGATTATTGCCGCAGCGCCAGTTAAGATGATGACAGATGTTGTACCTTACACATTTCGGCAAGATTCTGACTAC GCATATATTACTGGATGCCAGCAACCTGGCGGTGTGGCAGTTTTGGGTCATGAGTTCGGTTTATGCATGTTCATGCCAGAAGCATCAGTTCATGATGTTA CTTGGCAAGGACCAACTGCAGGAGTTCATGCAGCTTTGGACACATTCAAGGCCGAGAAAGCATATCCTTTGAGTAAATTAAGAAAGGTTCTTCCAGATAT GATCAGGGGATGCTCCACGTTGTTCCATAACACTCTAACAGCCATACCAAAATACACAGAGTTGGAGGCCTACCAAAAGGTTGCTTTAACGGGCAAGGTT GAAGATCTTTCGTGTTTCACGCATGAGTTACGTTGGGTAAAATCACCTTCGGAGCTGAAGTTAATGAGAGACTCTGCATCGATTGTTTCTCAGGCTCTCT TGCAGACGATGTTACATTCCAAGATGTACCCGTATGAGGGTATGTTGGCTGCAAAAGTCGAATATGAAAGCAAAATGAGAGGTGCTCAGAGGATGGCATT TAATCCTGTTGTTGGTGGGGGTTCTAATGCCAGCGTCATCCATTATTCCCGGAACGATCAAAAAATTAAAGATGGGGATCTTGTTCTAATGGATGTTGGA TGCGAGTTGCATGGTTACGCCAGTGATCTAACTCGAACATGGCCGCCATGTGGCTGCTTTTCTTCGGCACAAGGAGAGCTTTATGATCTTATCCTTCAAA CAAACAAAGAATGCATCGAGCTTTGTAGACCTGGAACAAGCATTCGTCAGATTCATGATCACTCGGTTGCAATGATGCGTAAAGGACTTGCGGAGATTGG ACTTCTGAGAAATAGCGGAAGCAATTCGTACCATCAGCTGAATCCGACTTCTATAGGTCACTACCTTGGAATGGACGTTCATGATAGTTCTTCCCTCAGC TATGATCGTCCATTGAAGCCTGGTGTTGTCATAACCATTGAGCCAGGAGTATACGTTCCACTGAGCTCTGAGGTTCCGGAAAGGTACCAAGGCATTGGCA TAAGGATTGAGGATGAGGTCCTAATTACGGAAACCGGTTATGAGGTACCCAATTTACTGAATTTCGGTCTGTTAATCTGCATCAGAGAGACTTTTCAGTT AAAAAGAGGTATCTTTCCTGCTTGTAAATCACCTTCGGAGCTGAAGTTAATGAGAGACTCTGCATCAATTGTTTGCCAGGCTCTCTTGCAAACGATGTTA CATTCCAAGACTTACCCGTATGAGGGTATGTTGGCTGCAAAAGTTGAATATGAAAGCAAAATGAGAGGTGCTCAAAGGATGGCATTTAATCCTGTTGTTG GTGGGGGTTCTAATGCCAGCGTCATCCATTATTCCCGGAACGATCAAAAAATTAAAGATGGGGATCTTGTTCTGATGGATGTTGGATGCGAGTTGCATGG TTATGCCAGTGATCTAACTCGAACATGGCCGCCATGTGGCTGCTTTTCTTCGGCACAAGGAGAGCTTTATGATCTTATCCTTCAAACAAACAAAGAATGC ATCGAGCTTTGTAGACCTGGAACAAGCATTCGTCAGATTCATGATCACTCGGTTGCAATGATGCGTAAAGGACTTGCGGAGATTGGACTTCTGAGAAATA GCGGAAGCAATTCGTACCATCAGCTGAATCCGACTTCTATAGGTCACTACCTTGGAATGGACGTTCATGATAGTTCTTCCCTCAGCTATGATCGTCCATT GAAGCCCGGTGTTGTCATAACCATCGAGCCAGGAGTATACGTTCCACCGAGCTCTGATGTTCCAGAAAGGTACCAAGGCATTGGCATAAGGATTGAGGAT GAGGTCCTAATTACGGAAACCGGTTATGTGGTACCCAATTTACTGAATTTCGGTCTGTTTATCTGCATCAGAGAGACTTTTCAATTAAAAAGAGGTATCT TTCCTGCTTGTACAATCAGGTACTTACAGGGTCCATGCCGAAGGAAGTTAAACATATAG
AA sequence Show only first row Show all	>Lus10010905 pacid=23172437 polypeptide=Lus10010905 locus=Lus10010905.g ID=Lus10010905.BGIv1.0 annot-version=v1.0 MQILFRKFLRPSPPLRRNVIGCCAYSSSKVLDVGQPTPATHPQLLKEGDLTPGISSDEYISRRKKLLDLLPENSLAIIAAAPVKMMTDVVPYTFRQDSDY AYITGCQQPGGVAVLGHEFGLCMFMPEASVHDVTWQGPTAGVHAALDTFKAEKAYPLSKLRKVLPDMIRGCSTLFHNTLTAIPKYTELEAYQKVALTGKV EDLSCFTHELRWVKSPSELKLMRDSASIVSQALLQTMLHSKMYPYEGMLAAKVEYESKMRGAQRMAFNPVVGGGSNASVIHYSRNDQKIKDGDLVLMDVG CELHGYASDLTRTWPPCGCFSSAQGELYDLILQTNKECIELCRPGTSIRQIHDHSVAMMRKGLAEIGLLRNSGSNSYHQLNPTSIGHYLGMDVHDSSSLS YDRPLKPGVVITIEPGVYVPLSSEVPERYQGIGIRIEDEVLITETGYEVPNLLNFGLLICIRETFQLKRGIFPACKSPSELKLMRDSASIVCQALLQTML HSKTYPYEGMLAAKVEYESKMRGAQRMAFNPVVGGGSNASVIHYSRNDQKIKDGDLVLMDVGCELHGYASDLTRTWPPCGCFSSAQGELYDLILQTNKEC IELCRPGTSIRQIHDHSVAMMRKGLAEIGLLRNSGSNSYHQLNPTSIGHYLGMDVHDSSSLSYDRPLKPGVVITIEPGVYVPPSSDVPERYQGIGIRIED EVLITETGYVVPNLLNFGLFICIRETFQLKRGIFPACTIRYLQGPCRRKLNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09300			Metallopeptidase M24 family pr...		Lus10010905 [exp]	0	1
AT1G54650			Methyltransferase family prote...		Lus10005515 [exp]	2.4	0.8940
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10004552 [exp]	9.8	0.8798
AT3G51980			ARM repeat superfamily protein...		Lus10023269 [exp]	15.7	0.8820
					Lus10032802 [exp]	18.0	0.8541
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10021657 [exp]	18.4	0.8786
AT2G43190			ribonuclease P family protein ...		Lus10019913 [exp]	20.4	0.8357
AT4G32360			Pyridine nucleotide-disulphide...		Lus10031463 [exp]	23.1	0.8113
AT1G70350			unknown protein		Lus10013008 [exp]	23.4	0.8507
AT4G02120			CTP synthase family protein (....		Lus10025042 [exp]	28.0	0.8814
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	35.1	0.8598

Compare expression of checked genes

Lus10010905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.