Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148200 [exp] 41 / 9e-05 AT3G17120 108 / 5e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010906 pacid=23172441 polypeptide=Lus10010906 locus=Lus10010906.g ID=Lus10010906.BGIv1.0 annot-version=v1.0 ATGAATAAGGGACATACGGATGATCAAAGCATGCTAGATTTGGAAAAAGGAGGGGTACTCAGCGACGAGGATGAATTTAGAGGGTTTAACAAGAGTAGTA GTAATAACAAGGGTGGTTCCAAGAGAAAGCTAGATAAGTTGAGAAGTGGATCATTGAACATCTATGGTAGGATTTACAAGGAAGGGGGGAAGAGTAAAGA TGGTAGTAGCTCTAAGAGACCTCCTCCTAAACCGCCTAGGCCGCCCAGGGGTCCGGACTTGGATGATGCTGATATGAAGTTCATTAAGGAGATCTCCGAG GTTTCGAAAGTTAAGCACGCTAGGATCGAACGGTTGAAGTCGATTAAGAGCAAGGGGGCGGTTGACAAGAAGAAGCCAGGGGAGGGTAAGAGCAGTGCTA ATGTTCTTGCGATGGTTGTCACTGTTGTGTTCTTCGTCATCATCGTGTTTCAAGGTATGGTGCATTGTCTTTGTTGTGTATAG
AA sequence Show only first row Show all	>Lus10010906 pacid=23172441 polypeptide=Lus10010906 locus=Lus10010906.g ID=Lus10010906.BGIv1.0 annot-version=v1.0 MNKGHTDDQSMLDLEKGGVLSDEDEFRGFNKSSSNNKGGSKRKLDKLRSGSLNIYGRIYKEGGKSKDGSSSKRPPPKPPRPPRGPDLDDADMKFIKEISE VSKVKHARIERLKSIKSKGAVDKKKPGEGKSSANVLAMVVTVVFFVIIVFQGMVHCLCCV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17120			unknown protein		Lus10010906 [exp]	0	1
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10023702 [exp]	1.7	0.8150
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10004885 [exp]	3.7	0.7835
AT3G58110			unknown protein		Lus10039903 [exp]	6.9	0.7413
AT2G02510			NADH dehydrogenase (ubiquinone...		Lus10005182 [exp]	8.2	0.7400
AT3G58110			unknown protein		Lus10002186 [exp]	14.0	0.7169
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10041296 [exp]	15.5	0.7154
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	15.7	0.7262
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10005038 [exp]	17.3	0.6915
AT4G19550			zinc ion binding;transcription...		Lus10006630 [exp]	19.7	0.7235
AT1G16860			Ubiquitin-specific protease fa...		Lus10005996 [exp]	20.2	0.6544

Compare expression of checked genes

Lus10010906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.