Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48910 409 / 6e-135 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 399 / 6e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 394 / 3e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 392 / 2e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 388 / 1e-125 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 379 / 4e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 377 / 4e-121 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 370 / 6e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 362 / 1e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18840 351 / 2e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031423 [exp] 862 / 0 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 858 / 0 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 426 / 2e-140 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 415 / 4e-137 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 413 / 2e-136 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 411 / 2e-134 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 404 / 1e-131 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 397 / 4e-130 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 397 / 8e-129 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012600 [exp] 640 / 0 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 452 / 2e-150 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 427 / 9e-141 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 412 / 8e-135 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 406 / 1e-132 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 400 / 2e-131 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G035900 [exp] 399 / 7e-131 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 398 / 4e-130 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 396 / 6e-130 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 390 / 7e-128 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010908 pacid=23172500 polypeptide=Lus10010908 locus=Lus10010908.g ID=Lus10010908.BGIv1.0 annot-version=v1.0 ATGAACAGAGTCTTCACAAATCCTCCTCCTCCACTGTTTCATTATCTTCTTGATTATCCTCCTCAAATCCAACCCAGTTACACCGATGAATCAATCCTAG AACTTATCAATTCCAAATCGACTCCCCTTTCGCAAATCCACGCTGTTATCCTGAAAACCGGCTATTTCCACGATCACTTCGTTACCGGAGCTCTACTCAG ATCCTACGCCACCAACCCAAAAGGCAGCTTGGACGACGCTCTCAAGTTCTTTAACCAAGTCCCTTCTCAAAACGACTTCGCCTACAATGTCCTGATCAAC GCCTGCGCCAACGGCAACAAACCCAGAACGGCAATGTCGCTCTACTGCCAGATGGTGGTCAACGACGATGCCAAGCCGGATAAGTACACTTACCCACCTC TGTTCAAGGCGTGTAAGAATTATTCTGAAGCGATGCAGGTTCATGGTCATGTGGTTAAGCTTGGGCTGTGTGATGAGCATATCAAGAGCGCTGGGATTCG GATGTACGGTAGGTTTGGGAAAGTGGACGATGCTAGGAATTTCCTTGACGATGACTGTAACGTTGTTTGTTGGAATGCCCTGATTGATGTGTGTTTTAAA TGCGGGGAGGTTGAAACTGCAGCTAAGGCGTTCGACGAAATGCCCGAAAGAAACATGTGGTCTTGGAATGCCGCGGTGAATGGTTTGGCCAAGTGTAGGA AGCTTAAGGAAGCTAGGATAGTGTTTGATCAGATGAAGGAACGAGATGAAATTACGTGGAGCAGTTTGATCGATGGTTACATCAATGGCGGATTTTACAA AGAGGCTTTAGAGGTTTTTAAGTTGATGCGGAAGGAAGGAGCTGAGCTAAGTAGGTTTGCTCTGACGAGTGTTCTTTCGGCCTGTGCTCATCTCGGAGCT CTTGATGAAGGTATATGGATTCATGATTACGTTAAGAAGAACATTGTTATGGATCCAACAATGGCGACCGCTTTGCTAGACATGTATGCGAAATGTGGGA AGCTGGCTATGGCTTGGGAAGTTTTTAAGAGCGTGAAGGATAAGAAGGTTTTCACATGGGACGCCATGATCGGTGGGCTGGCGATCCACGGTCGAGCTGA CTATGCAGTGGAGCTCTTCAAAGAGATGCTGAGGGAGAAGTTCAAACCGGACAAGATCACGTTCGTCGGATTATTGAACGCCTGTGCTCATTCGGGGGAT ATCGATCAAGCTATGGAGATTTTCGATTCGATGGAGAGTGTTCACAGGGTTAAACGAGCGTTGGAACATTACGGTTGTTTGATTCACGGTTTAGCCAGGG CCGGAAGGTTACGAGAGGCCGAGGAGCTAATGAATTCGATGCCAATGGCTCCCGAGGCATCGACCTATAAAGGATTGCTCGTCGGGTGTAGGATCTATGG CAATGTAGAGATGAGCAAACGAATTGAGAAGATTCTGGTCGAGCGCGATCCGGCCAACAGCCGATTATACGCATCATTGACTATCCGAGGCGGGAAGAAG GCGAAGAAGGGAAGTGGCGGGGTTAAGAACATTGTTGCGGAGAGTAGCACGATTGATCTAGGCGGGGGGTGTATTCGCGAGTTCAAGATGGGGGCATCGT CGCAGGAGGTCCATTTGATGGTTCGGGAGATGATCGAGAGGATCGAGGGGGAAGGCTACGTGAGCGATACATCGTCGGAGATGCTGGACGTGGAGGAAGA GGAGGATCGAAGCGCGATGCGGTACCACAGCGAGAAGCTGGCGATTGCATTCGGGTTGATCAACACGAAGCCCGGGACGACGATAAGGGTGGTGAAGAAT TTGAGGGTTTGCGATGATTGTCACAATGCTGTGAAGATCATCTCTCGAGTTTATGGTCGAGAGATTATAGTGAGGGATCAGGTGAGGTACCATGAGTTCA GCAATGGTGCTTGTTCTTGTAATGACTTTTGGTAG
AA sequence Show only first row Show all	>Lus10010908 pacid=23172500 polypeptide=Lus10010908 locus=Lus10010908.g ID=Lus10010908.BGIv1.0 annot-version=v1.0 MNRVFTNPPPPLFHYLLDYPPQIQPSYTDESILELINSKSTPLSQIHAVILKTGYFHDHFVTGALLRSYATNPKGSLDDALKFFNQVPSQNDFAYNVLIN ACANGNKPRTAMSLYCQMVVNDDAKPDKYTYPPLFKACKNYSEAMQVHGHVVKLGLCDEHIKSAGIRMYGRFGKVDDARNFLDDDCNVVCWNALIDVCFK CGEVETAAKAFDEMPERNMWSWNAAVNGLAKCRKLKEARIVFDQMKERDEITWSSLIDGYINGGFYKEALEVFKLMRKEGAELSRFALTSVLSACAHLGA LDEGIWIHDYVKKNIVMDPTMATALLDMYAKCGKLAMAWEVFKSVKDKKVFTWDAMIGGLAIHGRADYAVELFKEMLREKFKPDKITFVGLLNACAHSGD IDQAMEIFDSMESVHRVKRALEHYGCLIHGLARAGRLREAEELMNSMPMAPEASTYKGLLVGCRIYGNVEMSKRIEKILVERDPANSRLYASLTIRGGKK AKKGSGGVKNIVAESSTIDLGGGCIREFKMGASSQEVHLMVREMIERIEGEGYVSDTSSEMLDVEEEEDRSAMRYHSEKLAIAFGLINTKPGTTIRVVKN LRVCDDCHNAVKIISRVYGREIIVRDQVRYHEFSNGACSCNDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48910		LPA66	LOW PSII ACCUMULATION 66, Pent...		Lus10010908 [exp]	0	1
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	1.7	0.9058
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10029422 [exp]	3.0	0.8847
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10000554 [exp]	6.6	0.8967
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10006927 [exp]	6.9	0.8712
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10004219 [exp]	8.9	0.8512
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10004151 [exp]	10.0	0.8704
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10041119 [exp]	13.3	0.8588
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10008400 [exp]	16.4	0.8544
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10041001 [exp]	16.9	0.8210
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10011941 [exp]	17.3	0.8422

Compare expression of checked genes

Lus10010908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.