Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 519 / 9e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 518 / 1e-175 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 499 / 1e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 496 / 1e-168 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 493 / 6e-166 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 465 / 7e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 465 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 454 / 3e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 452 / 4e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 452 / 1e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031423 [exp] 1226 / 0 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010908 [exp] 828 / 0 AT5G48910 410 / 5e-135 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 513 / 1e-173 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 506 / 2e-172 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 506 / 8e-171 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 503 / 1e-169 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 500 / 1e-168 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 493 / 3e-167 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 492 / 8e-167 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012600 [exp] 828 / 0 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 537 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 530 / 1e-180 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 514 / 3e-174 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 505 / 2e-172 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 505 / 2e-172 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 499 / 6e-169 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 500 / 9e-169 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G035900 [exp] 493 / 4e-167 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 489 / 1e-165 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010909 pacid=23172513 polypeptide=Lus10010909 locus=Lus10010909.g ID=Lus10010909.BGIv1.0 annot-version=v1.0 ATGAACACGATCGCCACAAATCCTCCTCCACCTTATCACCATCACCACCATCCTCCTCCCCAAACCCAACCCATATCAATTCCCACCCAGAGATCAATCC TAGACCTTCTCGATTCCAAATCCACACCTCCTTCGCAAATCCACGCCCTCGTCGTCAAAACCGGCCATTTCCACGACCACTTCGTCTCCGGCACCTTACT CAAATCCTACGCCACCAACCAGAGCTTAAACCACGCTCTCCAAATCTTCCACCATGTCCCTTCCCCAAACGTCTTCGTCTACAACGTCCTCATCAAATCC TCCCTCGACAACGACGAGCCCCAAACGGCGATGTCGCTCTACTGCCAGCTGATGGTCAACAACGCGAAACCGAATGAGTACACTTACACTCCTCTGTTAA AAGCTTGTGGGAGTTTTTCAGAAGGTCTGCAGATTCATTGTCATGTTGTTAAGTTCGGGTTGTGCGGAGATAACCATATCAAGAGCGCTGGAATTCGAAT GTATGGGAGGTTTGGGAAGGTGGATGATGCTAGGAAGTTGCTCGATGAAGGATGTGATGAATGCGACGTGGTTTGTTGGAATGCGGTGATCGACGGATAT TTCAAAGCTGGGGAGGTTGAAGCTGCCCGGAACGTGTTTGAAGAAATGCCTCAGAGGAACATTGGGTCTTGGAATGCTGTGATTAGCGGGTTGGCTAAGT GTGGGAAAGTTGAGGAAGCTAGGAAAGTGTTTGATGAGATGGGGAAAAGAGATGAGATTACATGGAGCGGGTTGATCGATGGGTATATTAATGGCGGGTT TTATAAAGAGGCTTTGGAGGTTTTTAATTTGATGCAGAAGGAAGGAATTGAGCTGAGTAGGTTTGCTTTAACGAGCGTTCTTTCGGCTTGTGCGCATCTC GGAGCTCTTGATCAGGGTAGATGGATTCATGCTTATGTTAAGAAGAATATGAAGAGGAAGATGGATCGAACAATGGCGACTGCTTTGCTAGACATGTATG CGAAATGCGGGAGGCTGGATATGGCTTGGGAAGTGTTTGAGAGCTTGAAGAACAAGCAGGTGTTCACATGGAACGCCATGATCGGTGGAATGGCGATCCA CGGTAGAGCTCAAGATGCGGTGGAGCTGTTTATGGAGATGCAGAGGAAGAAGATCAAACCGAACGAGATCACGTTTGTAGGGGTGTTGAATGCCTGTGCT CATTCGGGAGATGTTGATCGCGCTATGGAGATTTTCGATTCGATGGAGAGCGTTTACGGTATCGTACCGGGAGTCGAGCATTACGGTTGTTTGGTTCATG GTTTGGCTAGAGCAGGAAGGTTGGAGGAGGCTGAGGAGTTACTCGATTCGATGCCGATGCCACCCAATGCAGCAGTCTACGGAGCCATACTCGGCGGGTG TAGGATCCACGGGAACGTGGATCTAGGCGAGCGAGTCGGAGAGATTCTTCTCGAGATCGATCCGGACAACAGCGGACGATACGCATTGCTGTCGAACATC TACGCAAAGGCCGAGAGGTGGGACGATGTCGTTAGAGTGAGGAAGCTGATGAAGGAACGAGGGGTCGAGACTGTTGCGGGTAGCAGCATGATCGATTTCG GCGGACTCATACACGAGTTTAAAATGGGCGAAACGTCTCACCCGCAAATCAAGGAGATTTACTCGATGCTCGAGGCGATGGTCACGAGGCTCGAGGCGGA AGGGTACGTGCCGAACACTTCGCAGGTGATGCTCGACATTGAGGAAGAGGAGAAGGAAGGGGCGTTGCGGTACCATAGCGAGAAGCTGGCGATCGCGTTC GGGTTTATTAACACGAAGGCTGGGACGACGATAAGGGTGGTGAAGAATCTGAGGGTTTGCGATGATTGTCATAATGCTATCAAGCTTATCTCGAAAGTTT ATGGTCGAGATGTTATACTGAGGGATCGGGTTAGGTACCATCATTTCAAAAATGGTGCTTGTTCTTGTAATGACTTTTGGTAG
AA sequence Show only first row Show all	>Lus10010909 pacid=23172513 polypeptide=Lus10010909 locus=Lus10010909.g ID=Lus10010909.BGIv1.0 annot-version=v1.0 MNTIATNPPPPYHHHHHPPPQTQPISIPTQRSILDLLDSKSTPPSQIHALVVKTGHFHDHFVSGTLLKSYATNQSLNHALQIFHHVPSPNVFVYNVLIKS SLDNDEPQTAMSLYCQLMVNNAKPNEYTYTPLLKACGSFSEGLQIHCHVVKFGLCGDNHIKSAGIRMYGRFGKVDDARKLLDEGCDECDVVCWNAVIDGY FKAGEVEAARNVFEEMPQRNIGSWNAVISGLAKCGKVEEARKVFDEMGKRDEITWSGLIDGYINGGFYKEALEVFNLMQKEGIELSRFALTSVLSACAHL GALDQGRWIHAYVKKNMKRKMDRTMATALLDMYAKCGRLDMAWEVFESLKNKQVFTWNAMIGGMAIHGRAQDAVELFMEMQRKKIKPNEITFVGVLNACA HSGDVDRAMEIFDSMESVYGIVPGVEHYGCLVHGLARAGRLEEAEELLDSMPMPPNAAVYGAILGGCRIHGNVDLGERVGEILLEIDPDNSGRYALLSNI YAKAERWDDVVRVRKLMKERGVETVAGSSMIDFGGLIHEFKMGETSHPQIKEIYSMLEAMVTRLEAEGYVPNTSQVMLDIEEEEKEGALRYHSEKLAIAF GFINTKAGTTIRVVKNLRVCDDCHNAIKLISKVYGRDVILRDRVRYHHFKNGACSCNDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010909 [exp]	0	1
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	1.7	0.9264
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10021410 [exp]	2.6	0.8956
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	3.5	0.8997
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	4.5	0.8976
AT1G16080			unknown protein		Lus10024094 [exp]	5.1	0.9047
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000036 [exp]	5.2	0.9024
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10023168 [exp]	7.5	0.8947
AT5G27990			Pre-rRNA-processing protein TS...		Lus10005806 [exp]	11.5	0.8239
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10003871 [exp]	12.3	0.8483
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Lus10013078 [exp]	12.7	0.8972

Compare expression of checked genes

Lus10010909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.