Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 101 / 2e-23 F-box family protein (.1) AT4G12560 99 / 1e-22 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G23880 96 / 5e-22 F-box and associated interaction domains-containing protein (.1) AT4G22390 91 / 5e-20 F-box associated ubiquitination effector family protein (.1) AT5G10340 81 / 1e-16 F-box family protein (.1) AT3G16210 77 / 3e-15 F-box family protein (.1) AT4G38870 73 / 5e-14 F-box and associated interaction domains-containing protein (.1) AT5G18160 72 / 1e-13 F-box and associated interaction domains-containing protein (.1) AT1G33530 66 / 8e-12 F-box family protein (.1) AT1G53550 64 / 3e-11 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031512 [exp] 370 / 1e-126 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10040463 [exp] 334 / 2e-112 AT4G12560 117 / 7e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10000190 [exp] 313 / 7e-104 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 313 / 7e-104 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 313 / 7e-104 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10043335 [exp] 247 / 1e-80 AT4G12560 84 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10040338 [exp] 188 / 5e-56 AT4G12560 78 / 1e-15 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10027028 [exp] 129 / 9e-36 AT4G12560 54 / 7e-09 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10025893 [exp] 130 / 1e-35 AT1G11270 49 / 7e-07 F-box and associated interaction domains-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G013000 [exp] 135 / 7e-36 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G010800 [exp] 122 / 2e-31 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 105 / 6e-25 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 91 / 3e-20 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.006G013200 [exp] 91 / 6e-20 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 89 / 2e-19 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G011400 [exp] 85 / 5e-18 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154500 [exp] 85 / 5e-18 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 85 / 6e-18 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 84 / 7e-18 AT3G06240 138 / 5e-37 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10010910 pacid=23172514 polypeptide=Lus10010910 locus=Lus10010910.g ID=Lus10010910.BGIv1.0 annot-version=v1.0 ATGTCAGACCTCATTCCACAAGAAATCATGGTCGACATTCTACAACGGCTGAGGGCGAAGGATTTGGTGATTTGCAGGAACGTATCGAAGCAGTGGATGT CGATTATCGACGACCCTCACTTCATCCGTAGCCAACTCCGTCGTTCCCTTTCCACAAACGCAAACTCTGCCCTTTTCATCCAAGACATGAAATCACCTGG AAAAGTAGTCTACTGGAATCGACAGAGGCATGCGGCCACTAGCAGCAGCAACTTGTTCTCCTCCGACCCGGTCTATTACGAGCCTAACCAAGAACTTGTG TTGATGGGTTCATGTCACGGCCTGGTATGCTTTTCTCTCTTGAGCTATCCACACGATTTCATAGTTCTTAACCCTTCAACAGGGGAGCGGCACACACTTA GCAATCACACAAAGGAGGACCAAGGAAGATCAAGTCCATGTGTGCAACTGAAAGCCTACGGTTTTGGGTATGACGAATTGTCAGACGATTACAAGTTGGT CAGGATTTTAGAAACGCGTCCCGGCGGCGACATTATTGCTGAAATTCACAGTGTCAGGTCCAAGGATTTCTATAGAACAATTCCTCTACCGGCTGGACAT TGGGCCACTTCCGGTACTAATCTCATCGGCGTGTTTTTCGGCAACTCGTTGCATTGGTGTAACTTCGACAATTGTAATCGACGTGTGATTCATGCGATTG ATCTCATGTCCAACACCTACCGCCAGTTGCAGTTTCCCGACCTGGTTTTCCAATATACATGCTTGTTTTTCTTCTTGAATGTGGGCGTTGTAGACGGCCG CTTGTGCTTTTGCGGTTTGCATAGGACTACGGGTGAGATTTGTATGTGGGTTATGGAGGAGTACGGGAATCCCAAATCCTGGAGTGACCTTTACTGCCTT TCGTATCGTGTTGATATTGGGTTGAGTTTTACGCCTGTGGTCTGTGTGGGGAATGATGGAAATAAGATTCTTTTCATGGTTAAATGGCGTGGATTTCTTC GGTATGATCCAACCACGAAGATTCTCGAGACTGATGTCGCTACGGTTCCGGTTCACTACTCTTCTTCGCGCTGTGAAGCTATCTATTGTTTGGAGAGTCT TGTTCAGATCTTTCCCAAGAATCGAACCCTGGTCTTCTAG
AA sequence Show only first row Show all	>Lus10010910 pacid=23172514 polypeptide=Lus10010910 locus=Lus10010910.g ID=Lus10010910.BGIv1.0 annot-version=v1.0 MSDLIPQEIMVDILQRLRAKDLVICRNVSKQWMSIIDDPHFIRSQLRRSLSTNANSALFIQDMKSPGKVVYWNRQRHAATSSSNLFSSDPVYYEPNQELV LMGSCHGLVCFSLLSYPHDFIVLNPSTGERHTLSNHTKEDQGRSSPCVQLKAYGFGYDELSDDYKLVRILETRPGGDIIAEIHSVRSKDFYRTIPLPAGH WATSGTNLIGVFFGNSLHWCNFDNCNRRVIHAIDLMSNTYRQLQFPDLVFQYTCLFFFLNVGVVDGRLCFCGLHRTTGEICMWVMEEYGNPKSWSDLYCL SYRVDIGLSFTPVVCVGNDGNKILFMVKWRGFLRYDPTTKILETDVATVPVHYSSSRCEAIYCLESLVQIFPKNRTLVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23880			F-box and associated interacti...		Lus10010910 [exp]	0	1
					Lus10011723 [exp]	4.0	0.9774
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10006687 [exp]	4.6	0.9470
					Lus10005396 [exp]	6.2	0.9761
					Lus10003840 [exp]	7.5	0.9761
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	8.7	0.9761
					Lus10022573 [exp]	9.7	0.9761
					Lus10006661 [exp]	10.7	0.9761
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10009378 [exp]	11.5	0.9761
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10038264 [exp]	12.3	0.9761
					Lus10012429 [exp]	13.1	0.9761

Compare expression of checked genes

Lus10010910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.