Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05250 113 / 3e-29 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004467 [exp] 159 / 3e-46 AT3G05250 288 / 9e-98 RING/U-box superfamily protein (.1) Lus10010910 [exp] 126 / 3e-33 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10029940 [exp] 113 / 2e-29 AT3G05250 227 / 3e-74 RING/U-box superfamily protein (.1) Lus10043335 [exp] 83 / 3e-18 AT4G12560 84 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 77 / 2e-15 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 77 / 2e-15 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10000190 [exp] 77 / 2e-15 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031512 [exp] 72 / 9e-14 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10040463 [exp] 67 / 6e-12 AT4G12560 117 / 7e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035600 [exp] 133 / 1e-36 AT3G05250 308 / 7e-106 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010911 pacid=23172485 polypeptide=Lus10010911 locus=Lus10010911.g ID=Lus10010911.BGIv1.0 annot-version=v1.0 ATGCAGCTCGAAGTTCGGATCTTGTGGCTCAATCGGTTGCGATGCCATCTCGTTGGGGTCCTCCAAGCCAGTTGCGCCGATCGAAGGGGCGGTCATCTCC GTTTGTGGTGTGAATCCGCGAGGAGTAACCGGTATGACGAATTGTCAGACGATTACAAGTTGGTCAGGATTTTAGAAACGCGTCCCGGCGGCGACATTAT TGCTGAAATTCACCGTGTCAGGTCCAAGGATTTCTATAGGACAATTCCTCTACCGGCTGGATGTTGGGCCACTTCCGGTTCTAGTCTCATCGGCGTGTTT TTCGGCAACTCGTTGCATTGGTTGGATACCATCGTCGGAAAAGCTGGTCTTGAGAAATGTCCACATAGATTCTGCTACCGATGCTTGATCGCATTGTGTA GAACAGCGTCTGAGATGAATTCTGCCCTGTCTTCAATTTCTTGCCCCGTTTGCAGGCAACCAAGCACGTACATCATGCATGATTTTGATGGAGCCTCATG GGTCAGATTTATGATCAGTACATTAGATAATCAGAGATTCTTTACAGAGAATCACAGATATAGAGTTTGGTGCTACTGTAATGATCCAGGAGTTGTTTTC AGTAAAGTGGTCAGAGTTCAGCAATTTTGGGAGATAGTAGGATCACGTTGGTTTTATGATAAACGAATGAATGGTTGGCTACATGATTGGCTAACAAGAG AAATCCAAGCTATATCCCAGGCCGAACCTGTTGAGACTGTTGTTATTCCTCTTCTAGCAGCTGCTACAAGTACCTTACCTACCTTAGAACGGTGTGTCAA TAAGAATTTATCAGCCACAGCAAAGCAGCAACAGTTCAAAGAAGCAGTCAGAAATGCAGTCAATGAACACATTCCAGGTTTTCCACAGCGACTGGTAGAT GAACTCGAGCTCTTCCTTGCTTTGGGATATACTTTGACAGGTTATGATGAACTATACAAGCAACATTTGGGCTGGAACAACCCTGGACGGCGCCGCAGGT TCCGTTGA
AA sequence Show only first row Show all	>Lus10010911 pacid=23172485 polypeptide=Lus10010911 locus=Lus10010911.g ID=Lus10010911.BGIv1.0 annot-version=v1.0 MQLEVRILWLNRLRCHLVGVLQASCADRRGGHLRLWCESARSNRYDELSDDYKLVRILETRPGGDIIAEIHRVRSKDFYRTIPLPAGCWATSGSSLIGVF FGNSLHWLDTIVGKAGLEKCPHRFCYRCLIALCRTASEMNSALSSISCPVCRQPSTYIMHDFDGASWVRFMISTLDNQRFFTENHRYRVWCYCNDPGVVF SKVVRVQQFWEIVGSRWFYDKRMNGWLHDWLTREIQAISQAEPVETVVIPLLAAATSTLPTLERCVNKNLSATAKQQQFKEAVRNAVNEHIPGFPQRLVD ELELFLALGYTLTGYDELYKQHLGWNNPGRRRRFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05250			RING/U-box superfamily protein...		Lus10010911 [exp]	0	1
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026177 [exp]	1.4	0.9257
					Lus10004431 [exp]	1.7	0.9236
AT3G02125			unknown protein		Lus10013196 [exp]	2.0	0.9258
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Lus10019906 [exp]	2.6	0.8902
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031157 [exp]	3.0	0.8689
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	3.5	0.9145
					Lus10005955 [exp]	4.5	0.9129
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10018825 [exp]	8.0	0.8442
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	9.5	0.8592
AT4G35160			O-methyltransferase family pro...		Lus10008538 [exp]	14.1	0.9005

Compare expression of checked genes

Lus10010911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.