Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26820 626 / 0 RTS3, MAR1, ATIREG3 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) AT5G26810 243 / 2e-72 Pectin lyase-like superfamily protein (.1) AT5G18990 214 / 1e-61 Pectin lyase-like superfamily protein (.1) AT2G47280 211 / 2e-60 Pectin lyase-like superfamily protein (.1) AT3G24130 206 / 5e-59 Pectin lyase-like superfamily protein (.1) AT2G19150 202 / 2e-57 Pectin lyase-like superfamily protein (.1) AT3G17060 195 / 6e-55 Pectin lyase-like superfamily protein (.1) AT5G19730 185 / 4e-51 Pectin lyase-like superfamily protein (.1) AT2G36710 177 / 3e-48 Pectin lyase-like superfamily protein (.1) AT1G05310 169 / 1e-45 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031421 [exp] 1538 / 0 AT5G26820 669 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10020698 [exp] 827 / 0 AT5G26820 657 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10029841 [exp] 810 / 0 AT5G26820 673 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10016678 [exp] 227 / 5e-66 AT3G24130 357 / 3e-123 Pectin lyase-like superfamily protein (.1) Lus10000935 [exp] 226 / 3e-65 AT3G24130 313 / 4e-105 Pectin lyase-like superfamily protein (.1) Lus10000936 [exp] 211 / 5e-61 AT3G24130 308 / 2e-104 Pectin lyase-like superfamily protein (.1) Lus10007136 [exp] 212 / 9e-61 AT3G24130 348 / 2e-119 Pectin lyase-like superfamily protein (.1) Lus10040541 [exp] 192 / 1e-53 AT3G17060 471 / 7e-168 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 189 / 2e-52 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012900 [exp] 726 / 0 AT5G26820 783 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Potri.013G008100 [exp] 305 / 2e-95 AT5G26810 256 / 3e-85 Pectin lyase-like superfamily protein (.1) Potri.004G033700 [exp] 284 / 8e-87 AT5G18990 298 / 8e-100 Pectin lyase-like superfamily protein (.1) Potri.005G012800 [exp] 284 / 8e-87 AT5G18990 281 / 1e-93 Pectin lyase-like superfamily protein (.1) Potri.017G054700 [exp] 215 / 7e-63 AT3G24130 378 / 2e-132 Pectin lyase-like superfamily protein (.1) Potri.008G104800 [exp] 198 / 6e-56 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 196 / 6e-55 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 185 / 2e-51 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 182 / 2e-50 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.003G076900 [exp] 173 / 3e-47 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06963 [flax] [poplar] FPN1 Ferroportin1 (FPN1) CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10010912 pacid=23172508 polypeptide=Lus10010912 locus=Lus10010912.g ID=Lus10010912.BGIv1.0 annot-version=v1.0 ATGCTAACCTTAATCACACTCTCCCTTCTACTCTCCACATCACTTGCCGCCCCCGGCCAAGAATGCGGCGGCAAGCCACCCTTCTGGGGCCCGAAGAACT CCAGGATGGTGGCCAAGTCGGGCGGTGGTGGGGCCTTCTCGACCGTACAAGCTGCCATTGATTCTGTCCCCGCTCGGAACGGTCAATGGGTCAAAATCCA TATCAAATCGGGCACCTATGTAGAACAAGTGACGATACCGTATACCAAGCCGTGTATATTTCTAGAAGGGGAAGGGAGCGGCACGACGATAATCGAGTAT GGTGCATATGCTCAGACCGACTCGAGCTCGACTTTCGCCTCCCAGCCTCCGAATGTTGTCGTCAAAGGCATTACCTTTAAGAATACCCATAATTTATTTA TGTCTCTTCCGAAAATCTACACCAAATTAGCCTCGTCTCAGGTGGTGCCGGCGTTGGCAGCCAGAGTCTACGGGGACAAGTCGGCCTTCTACGATTGCAA GTTCATCGGAGTGCAAGACACACTCTGGGATGTCAGCGGCCGCCATTACTATCTCAATTGCTACATCCAAGGCGCAGTGGATTTCATTTTCGGCGACGGG CAATCATTCTTCGAGAACACGCAAATATACGCGACGTCAGGAGGGTTTGTAACGGCACAACACCGGAATAGCGGTAACGAGCCAAGTGGGTTCGTGTTCT ACGGTGGCAAGATCGATGGAGCCGCGGGCGTCCAAACGCTCCTTGGCCGAGCTTACGGACCTTTCTCCAGAGTCATCTTTCAGTCAACTTACATGTCCGC CGTCGTCGACCCTCGTGGCTGGGATGCTTGGCATTTCGCTGGCCAAGAAGAACAGGTGACGATACCACAGACCAAGCCGTGCATATTTCTAGAAGGGGAA GGGAGCGGCGCGACAATAATCGAATATGGTGCGCATGCTCAAACCGACACGAGCTCGACTTTCTGCTCTTACCCTCCGAATGTTGTAGTCAAGGGCATTA CCTTTAAGAATACCCATAATTTATTGATGACACTCCCGAAAAACTACAGCGAGTTAGGCGATGCTGTGGTGGTGCCCGCTTTGGCTGCCAGAATCTACGG CGACAAGTGTTCTTTCTACAATTGCAGGTTCATCGGGGTGCAGGACACGTTATGGGATGCTAGAGGCCGCCATTATTACCTCAATTGCTACATCCAAGGC GCGGTAGATTTCATTTTCGGCTCGGGCCAATCGTTCTACGAAAACACGCAATTATACGCGACGTCTGAAGGGTTCATAACGGCGCAACGTCGGAGTAGAG GTGACGAGCCAAGTGGGTTCGTGTTCTACGGCGGTAGTGTCGGTGGAGCCCCCGGTGTCCGAACGTTCCTCGGCCGAGCTTACGGGCCTTTCTCCAGAGT CATCTTTCACTCAACTTACATGTCATCAGTCGTTGACCCTCGTGGCTGGGATGCTTGGGGTTATGCTGGCCATGAGGCTAATTTCGTATATGCCGAAATA GGTTGTAAAGGACCAGGATCATACATGTCAAAACGGGTCCCATGGGAGAAGAAAATCAACCCTAGTAGCCAATATTTTAGACGGTCATTCATCGACCAAG ATGGTTGGATCGTATTCCTTCAAGTTCTTCAGGTTGAAGGAGCTACAGCTATTCTTAATTTGGCCATGGTCCAATTCGCTCTATCGGAATCCGTCTGTCC AAGTTTCAGCTTCTTTTATCCGGCGGCTATATTGCACCCGCCGCCTTCTGCTCGAATTCGCTATCGCGTCTCTACTCGCCGACGGTTGACTTCCGATATC ATCCCTTTCAGGATTAGGCCTGTTGATTTGAGGTGCTCGAATTCGAATTCTGATGTACAATTCGACCATGCCGTGGCTGATGATGAGTTCCCGGAAGAGG ACTCATGCCCCATTGTTCAGCTCAATACTGAGATTCTTGAGACTCCAAGTTTTGGTTTGTTGGTGGAAACAGCTGATGATGGGGATCGAATTTTGCTCGG GCTTCCTGTTCTATCCAAGGAGGAGCAGAATGCGCCTGCTGCCATCCCTGCTCATCCAATTGGATTATATGCATTTTATGCTAATGTGGTGGCTGGAAAC GTTGTGGAAAGCTTATGGGAGTTCGCCTGGCCTTCTGCTATTGCATTGCTCCATCCGAGTCTTCTACCGGTGGCAGTCATCGGTTTCTTTGCTAAGTTGA CTTTACTTGTTGGGGGGCCTTTGCTTGGAAAACTTATGGACCATTATCCAAGAGTACCATCATACATTACTCTGAATGTCGTCCAGGCAGCTGCTCAGTT GTTGTGTGCAACAATGATAATTCATGCTTACAATGTCGCACCAAGTTCCTCGTCTTCTGTTGTCTTCCGTCCTTGGTTTGCTGTCTTGGTCTTCGCTGGG GCTGTTGAGAGACTATGTGGAGTAGCATTGGGGATCGCTAATGAGCGTGACTGGGTTGTGCAGTTAGCTGGGACGAATAGGCCTATTCCACTTGCAGAAT CAAATGCTGTTCTCAGCCGTATTGATCTACTTTCAGAGATAGCAGGGGCATCAATGTTTGGAGTTCTTCTTTCCAAGTATGGTCCAGTGACTTGCCTGAA ATTCGCTTCTACTTTGATGATTGGTTCATTGCCATTCATGATCGGGCTCACACTTTTAACGAACAAGCTGTCGAATGGGATTCTCGCCAATGCTAGATCT TCCCAATCTTGTTGCAGAGACTCCCTTGATCAAGCTATCAATCCAAATCACCATATAGTTGACCAATGCCTCGAAACATTCAAGCTTGGATGGAAGGAAT ATATCCAGCAGCCAGTTCTTCCTGCAAGCATTGCCTATGTGCTACTGTTCTTCAACGTTGTACTCGGTCCTACTAGTTTGATGATGGCGTTTTTGACTCA GCGAGGAGTAAGTTCGTCCATAATCGGTGGCTTCAGCGGACTGTGTGCTGCCATGGGGGTCGTCGCAACATTCCTCGCAGCAACTCTGGTCAAGCAACTA GGGATTCTAAAGGCTGTAGCTTTCGGGTTAATATTCCAGGCTTCATTGCTTCTAATGGCTGTTACAGTATACTGGACTGGACCTCTCTCTAACCACAGTT CCATCATCTTCTTCCTCGGCCTAATCGTACTATCAAGGCTGGGCCAAATGTCAACAGAAGTTGCAGGTGCACAAATTCTCCAGACAGGGATTCCATCGTC CAAGGCGAACCTGATTGGGATAACTGAGGCTTCAGTTGCCAGTTTGGCAGAATCCTTAATGCTCGGAGTAGCTATCGTAGCGAACGATGCTTCCCATTAT GGAATGCTCGCAATGCTCTCGGTTACTGCAGTGGTTGGCTCAGCCTGGATCTTCTGCAGATGGGCAATGAACCCAACACCAGAACAAAGGAAGCTCTTCT CTTCTAACCCTACTGATCCTAATGCCTGA
AA sequence Show only first row Show all	>Lus10010912 pacid=23172508 polypeptide=Lus10010912 locus=Lus10010912.g ID=Lus10010912.BGIv1.0 annot-version=v1.0 MLTLITLSLLLSTSLAAPGQECGGKPPFWGPKNSRMVAKSGGGGAFSTVQAAIDSVPARNGQWVKIHIKSGTYVEQVTIPYTKPCIFLEGEGSGTTIIEY GAYAQTDSSSTFASQPPNVVVKGITFKNTHNLFMSLPKIYTKLASSQVVPALAARVYGDKSAFYDCKFIGVQDTLWDVSGRHYYLNCYIQGAVDFIFGDG QSFFENTQIYATSGGFVTAQHRNSGNEPSGFVFYGGKIDGAAGVQTLLGRAYGPFSRVIFQSTYMSAVVDPRGWDAWHFAGQEEQVTIPQTKPCIFLEGE GSGATIIEYGAHAQTDTSSTFCSYPPNVVVKGITFKNTHNLLMTLPKNYSELGDAVVVPALAARIYGDKCSFYNCRFIGVQDTLWDARGRHYYLNCYIQG AVDFIFGSGQSFYENTQLYATSEGFITAQRRSRGDEPSGFVFYGGSVGGAPGVRTFLGRAYGPFSRVIFHSTYMSSVVDPRGWDAWGYAGHEANFVYAEI GCKGPGSYMSKRVPWEKKINPSSQYFRRSFIDQDGWIVFLQVLQVEGATAILNLAMVQFALSESVCPSFSFFYPAAILHPPPSARIRYRVSTRRRLTSDI IPFRIRPVDLRCSNSNSDVQFDHAVADDEFPEEDSCPIVQLNTEILETPSFGLLVETADDGDRILLGLPVLSKEEQNAPAAIPAHPIGLYAFYANVVAGN VVESLWEFAWPSAIALLHPSLLPVAVIGFFAKLTLLVGGPLLGKLMDHYPRVPSYITLNVVQAAAQLLCATMIIHAYNVAPSSSSSVVFRPWFAVLVFAG AVERLCGVALGIANERDWVVQLAGTNRPIPLAESNAVLSRIDLLSEIAGASMFGVLLSKYGPVTCLKFASTLMIGSLPFMIGLTLLTNKLSNGILANARS SQSCCRDSLDQAINPNHHIVDQCLETFKLGWKEYIQQPVLPASIAYVLLFFNVVLGPTSLMMAFLTQRGVSSSIIGGFSGLCAAMGVVATFLAATLVKQL GILKAVAFGLIFQASLLLMAVTVYWTGPLSNHSSIIFFLGLIVLSRLGQMSTEVAGAQILQTGIPSSKANLIGITEASVASLAESLMLGVAIVANDASHY GMLAMLSVTAVVGSAWIFCRWAMNPTPEQRKLFSSNPTDPNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10010912 [exp]	0	1
AT3G25640			Protein of unknown function, D...		Lus10019166 [exp]	2.6	0.8652
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009669 [exp]	4.0	0.8643
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Lus10033567 [exp]	7.4	0.8473
AT5G05340			Peroxidase superfamily protein...		Lus10006534 [exp]	7.7	0.8436
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10001093 [exp]	9.0	0.8635
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	12.0	0.8381
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	15.7	0.8620
AT5G14230			unknown protein		Lus10036989 [exp]	18.6	0.8398
AT2G18570			UDP-Glycosyltransferase superf...		Lus10041713 [exp]	19.9	0.8607
					Lus10033359 [exp]	21.4	0.8567

Compare expression of checked genes

Lus10010912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.