Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56460 250 / 1e-76 HIT zinc finger ;PAPA-1-like conserved region (.1.2) AT2G47350 196 / 2e-56 HIT zinc finger ;PAPA-1-like conserved region (.1.2) AT3G06660 194 / 5e-56 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031419 [exp] 803 / 0 AT1G56460 349 / 9e-115 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Lus10016899 [exp] 204 / 1e-59 AT3G06660 214 / 1e-64 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) Lus10037760 [exp] 203 / 3e-59 AT1G56460 209 / 9e-63 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008300 [exp] 458 / 5e-156 AT2G47350 268 / 3e-83 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.005G014000 [exp] 455 / 2e-155 AT1G56460 250 / 1e-76 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.014G119600 [exp] 282 / 6e-88 AT2G47350 272 / 1e-84 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.002G195132 [exp] 271 / 4e-87 AT1G56460 236 / 5e-74 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.008G106200 [exp] 215 / 3e-64 AT3G06660 204 / 4e-61 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04795 [flax] [poplar] PAPA-1 PAPA-1-like conserved region CL0175 [flax] [poplar] TRASH PF04438 [flax] [poplar] zf-HIT HIT zinc finger
Representative CDS sequence Show only first row Show all	>Lus10010914 pacid=23172511 polypeptide=Lus10010914 locus=Lus10010914.g ID=Lus10010914.BGIv1.0 annot-version=v1.0 ATGGAGGGTTTCGGATTCAGTGATGCCAGCAGTGCCGTAAGGAAAAAGAGGAGTAGTACCTCTCGTCGTCCTCACCCTGAATCGCATCCTCCTTCTGATC CATACGACGTTTCATCTTTATCGTCCACTCCTCCTTCAGACAATAATACGTTGAAAGTTGACGATGGAGGGTTTGTGGAATCTGATGAAGCTTCCAACAA CAGTGGTTCGTTTCGCGGTAGTAATAATGATCAGAGGCACAGCGTGGCTGATTCTCGGAGGTGTAGCGAGGGTGTCCTTGCACCGGCCAATTGGAAGAAC TCCGCTGCTGGGAACTTTGATGCTGCTGCTTCGGATGGAGTAGCTGCTAATAGTAACAAAGTTAAGAAGGTTAAGCTTAAAGTTGGCGGTGTAACTCGGA CCATCAATGCTAATTCTCCGTCTGACGGTGCATCTGCTGTTGGTCCTTCTTCGACGAAGTCTTCGCATTTTCCGGGCTTGGAGCATAAGCCTACAAAGGA CAACATAGTTGAGAACAATGGTTCGATTACTTCCAATAGAGCGAGCGGTCCACGAAGAGCATGGAAGGATTTGCCTAAAAGCGGCTCGAGTGGAAGGGGA GGCGGAGAAAACTCAAAGCAAAAGACGCTTACCGAAACTCGCTCCCCAAAGCAAGCGGACAACTACGAGCCTGTCCGCAAAAGCAAACGCGTCCCCAAGA AACGTCTTCTCGACGACATGTTTGACGACGGAGTCGAGGATGGCAATGTTGTGAAAGCCAGTTACGGTATGGAGTTCGAAGACGAGGACGAGGCAGGAAG CAGAAAGCAGCGGAGGTTATCGAAGGTTATGAAAAAGAACGTGGATGTTCTGTATGATGTCGAGCCTCGAGGCTCGTCGAGAACGGTGAAGGAAGGAGGT AAGAATTCGTCGTCTACTAAGTCGGGGAAAGTATCGGAAGACATTGATTATATTGAAGACAACCATGACTTGGCATCGGACGACGAGCCTGGAACGAAGA ATAAGAAGAAGGCGGCAAGGAGGGAGTTGGTAATCGAGTTACCTATCGAGCCAAAGAAGGAAATGACGGTTACAACTCGCCAGAGAGCTCTACAAACCGG CAAAGATGGCTCATCTACTGATTTGGGTGGTGCTGGTGTTATTGAGTTCCCCAATGGCCTCCCTCCCGCCCCTCCGAAAAAACAAAAGGAGAAGCTCACT GAAGTGGAGCAGCAACTAAAGAGAGTTGAGGCTCTCCAGAGACGTCGGTTACAAGTCGAGAAGGCAGCTAGGGACTCCGAGGCTGAGGCGATCAGAAAGA TTCTCGGCCAGGATTCGAGCAGGAAGAAGCGTGAGGAGAAAGTCAAGAAGCGGCAGGAAGAGTTAGCACAGGAAAGAGCTGCAAACTTCATGACACTCGC ATCTGACCGAGTCAGGTGGGTCGATGGTCCGTCGGGAACAGTTGTAACATTCCCTGAAGAGATTGGCCTTCCCAGTATATTCCACTCCAAGCCTCAAAGT TACCCTCCACCCAGAGAGAAATGTGCTGGACCATCGTGTACAAATCCATACAAGTACAGAGACTCCAAGTCAAAGCTTCCACTTTGCAGCCTCCAGTGCT ACAAGGCGATCCATGCTTGA
AA sequence Show only first row Show all	>Lus10010914 pacid=23172511 polypeptide=Lus10010914 locus=Lus10010914.g ID=Lus10010914.BGIv1.0 annot-version=v1.0 MEGFGFSDASSAVRKKRSSTSRRPHPESHPPSDPYDVSSLSSTPPSDNNTLKVDDGGFVESDEASNNSGSFRGSNNDQRHSVADSRRCSEGVLAPANWKN SAAGNFDAAASDGVAANSNKVKKVKLKVGGVTRTINANSPSDGASAVGPSSTKSSHFPGLEHKPTKDNIVENNGSITSNRASGPRRAWKDLPKSGSSGRG GGENSKQKTLTETRSPKQADNYEPVRKSKRVPKKRLLDDMFDDGVEDGNVVKASYGMEFEDEDEAGSRKQRRLSKVMKKNVDVLYDVEPRGSSRTVKEGG KNSSSTKSGKVSEDIDYIEDNHDLASDDEPGTKNKKKAARRELVIELPIEPKKEMTVTTRQRALQTGKDGSSTDLGGAGVIEFPNGLPPAPPKKQKEKLT EVEQQLKRVEALQRRRLQVEKAARDSEAEAIRKILGQDSSRKKREEKVKKRQEELAQERAANFMTLASDRVRWVDGPSGTVVTFPEEIGLPSIFHSKPQS YPPPREKCAGPSCTNPYKYRDSKSKLPLCSLQCYKAIHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10010914 [exp]	0	1
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042875 [exp]	5.4	0.8257
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	11.5	0.7839
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10028175 [exp]	15.0	0.8054
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	17.4	0.7929
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	19.7	0.7979
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	20.2	0.7852
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10015016 [exp]	32.6	0.7495
AT5G24320			Transducin/WD40 repeat-like su...		Lus10023033 [exp]	33.2	0.7142
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10024244 [exp]	38.0	0.7182
					Lus10008674 [exp]	38.7	0.7593

Compare expression of checked genes

Lus10010914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.