Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56440 399 / 4e-136 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G17970 73 / 1e-13 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 67 / 8e-12 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT1G12270 48 / 8e-06 Hop1 Hop1, stress-inducible protein, putative (.1) AT2G42810 48 / 8e-06 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G62740 48 / 1e-05 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G08320 46 / 3e-05 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42580 46 / 3e-05 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT4G12400 45 / 0.0001 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT3G25230 44 / 0.0002 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031418 [exp] 684 / 0 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042001 [exp] 72 / 3e-13 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 71 / 6e-13 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009682 [exp] 71 / 9e-13 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009050 [exp] 55 / 1e-07 AT3G17970 675 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10022500 [exp] 53 / 3e-07 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10016804 [exp] 52 / 7e-07 AT5G65160 635 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10018179 [exp] 47 / 2e-05 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 47 / 2e-05 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014100 [exp] 464 / 7e-162 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G008400 [exp] 462 / 5e-161 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.012G046900 [exp] 73 / 1e-13 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 73 / 2e-13 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 61 / 7e-10 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.001G119500 [exp] 54 / 1e-07 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.005G166300 [exp] 54 / 2e-07 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 52 / 8e-07 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G255300 [exp] 48 / 8e-06 AT1G04130 470 / 5e-167 tetratricopeptide repeat 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G141800 [exp] 46 / 3e-05 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10010915 pacid=23172476 polypeptide=Lus10010915 locus=Lus10010915.g ID=Lus10010915.BGIv1.0 annot-version=v1.0 ATGGCTGGAACTCCGACCAAACACGGACGCGATCAAGCAATGGATTTCCAGGGGTTTCTGAATGACTTGCAGGATTGGGAGCTTAAGCTTAACGACAAGG ACAAAAGGATGAAGCCGCTAGCATCTGATAAGAAAGCCGAATCTTCAAGGGGGAGCGGTTCGTTACTTCGTGATTATCCAAGGAATATTGGTTCAGTCAA CGATGAGAATGCAGTGGATGCTACTTCAGAGAAGGAATTGGGGAATGAGTACTTCAAGCAGAAGAAATTCGTTGAAGCTATAGAGTGCTACTCTCGCAGC ATAGCATTTCAAGAGGCTGAGGATGATTGTACAGAGGCCTTGAATTTGGATGACCGCTACATAAAGGCTTACTCACGCAGAGCTACAGCTAGAAAAGAGT TAGGCAAGCTTAAGGAGTCCATGGAAGATTCTGAGTTTGCCTTAAGGTTGGAGCCTAACAATCAGGAAATTAAGAAACAGTACGATGACGCAAAGTCTTT GTACGAGAAGAAACTCTTTCAGAAGGTATCAGGAGGATCTAAAAGCTCCTCACAACCAGCGGTAAAATTCGGAAAGCCAGTTAAGGTTAATGGGGTTGGT GATGCATCTGTTTCAAGACCCTCCCAGAAAGCTGGATCAGCAGCAGCTGTTCAGAAAGATAAGACTAAGGAGAATGATGGAGCTCTTGGGGGAAACGCTA TCCTCATTAAGGAAATAGAGACCATAAGCTCAGTTACCAATAACCGAACAGAAAGACGACATGTCAATAGCCGTGAAGCGCCTCCTGGTCCTAGTTTGGA GAATGTTCAGACTCGTCAAAAGAATGGAATGCAAGAGCTTAAACCCTCTGTACATGAACTCGCGTCAAGAGCAGCTTCTCGTGCCAAGACCGAAGCTGCA AAGAACATCACTCCACCAACTTCAGCTTACCAATTCGAAGCTTCTTGGCGAAAGTTTTCTGGTGACAGTTCATTGCAGACTTCCCTGCTAAAGGTTACAC CTCCAAGTTCGTTGCCCCGAATATTCAAGAGCTCGTTATCCGCTCCTATGCTAATGGACATCATCAAGTGTGTCTCCACTTTCTTCAAAGACGACATGGA TCTTGCTGTCAAATACCTGGAGAACTTGACCAAGGTCCCGAGGTTTAGCATGCTCATCATGTCCCTTTCAACACCAGATAGGACTGATCTCCAGAAGACT TGGACTAAAGTTTTCTGCAGCGAGATGACTCAGGTCGAGTATGCAGAGATCCTCGATGGCCTGAGATCAGCATATTGCATCAGATGA
AA sequence Show only first row Show all	>Lus10010915 pacid=23172476 polypeptide=Lus10010915 locus=Lus10010915.g ID=Lus10010915.BGIv1.0 annot-version=v1.0 MAGTPTKHGRDQAMDFQGFLNDLQDWELKLNDKDKRMKPLASDKKAESSRGSGSLLRDYPRNIGSVNDENAVDATSEKELGNEYFKQKKFVEAIECYSRS IAFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESMEDSEFALRLEPNNQEIKKQYDDAKSLYEKKLFQKVSGGSKSSSQPAVKFGKPVKVNGVG DASVSRPSQKAGSAAAVQKDKTKENDGALGGNAILIKEIETISSVTNNRTERRHVNSREAPPGPSLENVQTRQKNGMQELKPSVHELASRAASRAKTEAA KNITPPTSAYQFEASWRKFSGDSSLQTSLLKVTPPSSLPRIFKSSLSAPMLMDIIKCVSTFFKDDMDLAVKYLENLTKVPRFSMLIMSLSTPDRTDLQKT WTKVFCSEMTQVEYAEILDGLRSAYCIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Lus10010915 [exp]	0	1
AT2G25280			unknown protein		Lus10001950 [exp]	2.4	0.9059
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	2.8	0.8903
AT5G58110			chaperone binding;ATPase activ...		Lus10028103 [exp]	11.6	0.8476
AT3G25120			Mitochondrial import inner mem...		Lus10013127 [exp]	14.5	0.8591
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10003260 [exp]	15.1	0.8760
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10004212 [exp]	15.2	0.8822
AT4G38170		FRS9	FAR1-related sequence 9 (.1)		Lus10013855 [exp]	15.9	0.8592
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10030478 [exp]	16.7	0.8743
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009398 [exp]	24.0	0.8658
AT2G28690			Protein of unknown function (D...		Lus10005884 [exp]	24.3	0.8543

Compare expression of checked genes

Lus10010915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.