Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25920 283 / 8e-96 RPL15 ribosomal protein L15 (.1) AT5G64670 63 / 2e-11 Ribosomal protein L18e/L15 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031417 [exp] 274 / 5e-94 AT3G25920 246 / 3e-83 ribosomal protein L15 (.1) Lus10032390 [exp] 54 / 3e-08 AT5G64670 385 / 9e-136 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10023078 [exp] 46 / 1e-05 AT5G64670 369 / 3e-129 Ribosomal protein L18e/L15 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121100 [exp] 283 / 2e-96 AT3G25920 310 / 1e-106 ribosomal protein L15 (.1) Potri.010G124301 [exp] 238 / 3e-78 AT3G25920 257 / 1e-85 ribosomal protein L15 (.1) Potri.016G002400 [exp] 59 / 7e-10 AT5G64670 315 / 1e-108 Ribosomal protein L18e/L15 superfamily protein (.1) Potri.001G324300 [exp] 57 / 3e-09 AT5G64670 323 / 1e-111 Ribosomal protein L18e/L15 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0588 [flax] [poplar] Ribos_L15p_L18e PF00828 [flax] [poplar] Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Representative CDS sequence Show only first row Show all	>Lus10010916 pacid=23172522 polypeptide=Lus10010916 locus=Lus10010916.g ID=Lus10010916.BGIv1.0 annot-version=v1.0 ATGGCGATTCTGCTATCCATCGCTCACACCGGAGCTACATTCTCCCTTCCTGGATACCCTTCCTCATTCAAAGCAAGCAGATTTCTCACTCCCGCGACCA ATTTCAGGCCAATCGTCAAAACCAGTAGCAAGAGCCGGCCATTACTGGTGGTCAATCGAGCTTCAGCCAAGGCCGAGCCGACGAGTGCGGCGGAGGGTGA GAGGTTGAGGCTCGATAATTTGGCGCCGCAGCCAGGTTCGAGGAAGAGACAGAAGAGGAAAGGGAGAGGTATCGCCGCCGGACAAGGTAACAGCTGCGGG TTTGGAATGAGAGGGCAGAAATCTAGGTCTGGACCTGGGATTATGAGAGGGTTTGAAGGTGGGCAGATGCCTCTTTACCGCCGTCTCCCCAAATTGAAGG GTATCGCAGGAGGTATGAGTGCTGGTTTACCTAAGTACGTCCCAGTAAACTTGAAGGACATAGCAGAAGCTGGATTCGAAGAGGGCGATGAGGTTTCGTT GGAGACCTTGAAAATGAAGGGCTTGATCAATCCATCTGGACGAGAACGGAAGCTTCCTCTCAAGATCCTAGGTGACGGGGAGATCAACGTGAAGCTGAAC TTCAAAGCACGGGCCTTTTCAACATCGGCCAAGGAGAAGCTGGAAGCGGTTGGCTGCTCCGTCACTGTATTACCTGGCCGAAAGAAGTGGCTGAACGCAG CAGTCCTCAAGAACCTTGCCAGAGCTGACGAATACTTCGCCAAGAAACGAGCTGCTGCAGCAGGAGAGGCCGATTCGGGAGCTCAGCCAGCATCTACTTG A
AA sequence Show only first row Show all	>Lus10010916 pacid=23172522 polypeptide=Lus10010916 locus=Lus10010916.g ID=Lus10010916.BGIv1.0 annot-version=v1.0 MAILLSIAHTGATFSLPGYPSSFKASRFLTPATNFRPIVKTSSKSRPLLVVNRASAKAEPTSAAEGERLRLDNLAPQPGSRKRQKRKGRGIAAGQGNSCG FGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLKGIAGGMSAGLPKYVPVNLKDIAEAGFEEGDEVSLETLKMKGLINPSGRERKLPLKILGDGEINVKLN FKARAFSTSAKEKLEAVGCSVTVLPGRKKWLNAAVLKNLARADEYFAKKRAAAAGEADSGAQPAST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	0	1
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	1.4	0.9577
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	2.4	0.9643
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10034205 [exp]	3.0	0.9566
AT4G01310			Ribosomal L5P family protein (...		Lus10036390 [exp]	3.9	0.9554
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	5.7	0.9558
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	6.5	0.9517
AT5G04590		SIR	sulfite reductase (.1)		Lus10027360 [exp]	7.1	0.9470
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	7.7	0.9520
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031791 [exp]	8.0	0.9504
AT2G28605			Photosystem II reaction center...		Lus10039615 [exp]	8.7	0.8936

Compare expression of checked genes

Lus10010916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.