Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56430 311 / 7e-106 ATNAS4 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) AT1G09240 309 / 3e-105 ATNAS3 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) AT5G04950 300 / 8e-102 ATNAS1 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1) AT5G56080 296 / 2e-100 ATNAS2 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, nicotianamine synthase 2 (.1) AT4G26483 51 / 2e-08 nicotianamine synthases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031416 [exp] 520 / 0 AT1G56430 340 / 2e-117 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10029843 [exp] 345 / 3e-119 AT1G56430 364 / 2e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10020696 [exp] 338 / 1e-116 AT1G56430 364 / 4e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014300 [exp] 342 / 5e-118 AT1G09240 405 / 8e-143 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) Potri.010G143100 [exp] 292 / 4e-99 AT1G09240 362 / 2e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) Potri.004G193400 [exp] 257 / 3e-85 AT5G04950 280 / 6e-94 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1) Potri.010G143133 [exp] 61 / 2e-11 AT1G56430 76 / 5e-17 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03059 [flax] [poplar] NAS Nicotianamine synthase protein
Representative CDS sequence Show only first row Show all	>Lus10010917 pacid=23172530 polypeptide=Lus10010917 locus=Lus10010917.g ID=Lus10010917.BGIv1.0 annot-version=v1.0 ATGGGTAGCATTTGCATGCAAGAGCAAGACAAGTTGGTGGCCAAAGTGTGCCAACTCTACGACGAGATCTCGAACCTCAAAACCCTCAAACCGTCTGAGG ATGTCAACTCTCTCTTCACCGAGCTTGTCCACACATGCATGCCGCCGAACCCTATCGATGTCGACACCGACCTCTTTCCAGAGGTCCAGGAGATCCGATC CAAGCTCATCGTGCTCAGCGGCCAAGCTGAGGGCTACCTGGAGAGCCACTACTCTGCGATCCTGGGATCCTACCCGAACCCACTTGACCATCTCGAGATA TTCCCTTACTACTCGAACTACCTCAAACTCAGCCTCCTTGAGTTCACCCTCCTCAAACAAAGCCACCCATCACTAAGCCCTAAAAAGGTTGCATTTCTGG GGTCGGGCCCACTTCCGTTGACTTCCATAGTGCTGGCCACTAAACATTTGACCAACGCTACCTTCCACAACTACGACATCGACCTCGAAGCTAATGAACT GGCATCGGGGTTGGTGTTGTCTAATCAGAAATTGTCTCCTCGTATGGTATTCCACACGAAGGACGTGATGGAGGTGACAGAGGAAGAGCTGGGGGAGTTC GATGTCGTGTTTTTGGCAGCATTGGTGGGGATGGATAAGGAAGTGAAGGTTAAGGTCATAAGACACTTGGGAAAACACATGAGAGACGGGGCGGTTCTGA TGTTGAGGAGTGCTCATGGCGCTAGAGGGTTTCTTTACCCGGTCGTCAACAATCACGACCTCGATGTTCACGGCTTCGAGGTTGACTCGGTTTTCCATCC GACAGATGAGGTGATTAACTCCGTTGTTATTGCTCATAAACAAGGGAGGGGCGTCGCAGGGGCAGCAGCCATGGGTGCGTGA
AA sequence Show only first row Show all	>Lus10010917 pacid=23172530 polypeptide=Lus10010917 locus=Lus10010917.g ID=Lus10010917.BGIv1.0 annot-version=v1.0 MGSICMQEQDKLVAKVCQLYDEISNLKTLKPSEDVNSLFTELVHTCMPPNPIDVDTDLFPEVQEIRSKLIVLSGQAEGYLESHYSAILGSYPNPLDHLEI FPYYSNYLKLSLLEFTLLKQSHPSLSPKKVAFLGSGPLPLTSIVLATKHLTNATFHNYDIDLEANELASGLVLSNQKLSPRMVFHTKDVMEVTEEELGEF DVVFLAALVGMDKEVKVKVIRHLGKHMRDGAVLMLRSAHGARGFLYPVVNNHDLDVHGFEVDSVFHPTDEVINSVVIAHKQGRGVAGAAAMGA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10010917 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10016325 [exp]	3.5	0.8583
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10038224 [exp]	3.9	0.9122
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10018275 [exp]	4.5	0.8597
AT1G49000			unknown protein		Lus10032453 [exp]	9.3	0.8705
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10031416 [exp]	11.7	0.8777
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042012 [exp]	18.5	0.8198
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	21.2	0.8630
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10016324 [exp]	22.6	0.8194
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10024808 [exp]	29.9	0.8582
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	34.5	0.8554

Compare expression of checked genes

Lus10010917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.