Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56423 226 / 2e-74 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031415 [exp] 336 / 1e-118 AT1G56423 288 / 7e-99 unknown protein Lus10020695 [exp] 270 / 4e-92 AT1G56423 306 / 3e-105 unknown protein Lus10029844 [exp] 269 / 1e-91 AT1G56423 310 / 9e-107 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008700 [exp] 259 / 2e-88 AT1G56423 283 / 1e-96 unknown protein Potri.005G017400 [exp] 248 / 3e-83 AT1G56423 297 / 9e-102 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010918 pacid=23172462 polypeptide=Lus10010918 locus=Lus10010918.g ID=Lus10010918.BGIv1.0 annot-version=v1.0 ATGGATTTCCAGAAGAGACGAGTTCAACTCCTTTCCTTCATCGTCGCCGTCATCGCTCTCAGCATCGCCGCTGAAAAATGCAGGGAGATGATGGGAGAGG ACTCATCATCCCAGAGCGGAAAATTCTCAATCTTCTACTGCTTCGACATGAGCACTGGAACCCTAGCCTGCACCGCGACACAAGCAGCGAAGCTATACGT CTACAACTTGAGATCCTCCCACGTCGAGAGGGCGAGGAACGCAGCGATCGAGAGTGCCATACACGACGCAATGCAGCAAGGCATATCACCCAAGGATGTG GCGAAGCAAGCACGGAGAGAAGGCGCCAAGGCAGCGAAGCTCGCCACGAGGAAGACAAGGCGGATCGTGGGTCCCATCGTGTCGTCCGGGTGGGACTTCT TTGAGGCCGTGTACTATGGCGGGACCGTGACTGAAGGGTTCCTGAGAGGGAGTGGGAGCTTGTTTGGTGCTTATGGTGGGGGGTTCTTGGGTGAGGAAAG GCTTGGGAGAGTTGGTTATTTGGTTGGGAGTCAGTTGGGGAGTTGGGTTGGTGGTCGGATCGGGTTGATGGTTTACGATGTGATGAATGGGGTTGGTTAT TTGGTTAATGGGTATGAAACGCCAGAATCAGAATAA
AA sequence Show only first row Show all	>Lus10010918 pacid=23172462 polypeptide=Lus10010918 locus=Lus10010918.g ID=Lus10010918.BGIv1.0 annot-version=v1.0 MDFQKRRVQLLSFIVAVIALSIAAEKCREMMGEDSSSQSGKFSIFYCFDMSTGTLACTATQAAKLYVYNLRSSHVERARNAAIESAIHDAMQQGISPKDV AKQARREGAKAAKLATRKTRRIVGPIVSSGWDFFEAVYYGGTVTEGFLRGSGSLFGAYGGGFLGEERLGRVGYLVGSQLGSWVGGRIGLMVYDVMNGVGY LVNGYETPESE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56423			unknown protein		Lus10010918 [exp]	0	1
AT5G19900			PRLI-interacting factor, putat...		Lus10019670 [exp]	4.0	0.8549
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10029534 [exp]	7.5	0.7812
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10011762 [exp]	7.7	0.8513
AT5G19900			PRLI-interacting factor, putat...		Lus10000189 [exp]	10.6	0.8272
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	12.4	0.8504
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	19.0	0.8132
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10018323 [exp]	19.6	0.7765
AT1G20225			Thioredoxin superfamily protei...		Lus10005616 [exp]	19.7	0.7975
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10031344 [exp]	26.5	0.8044
AT4G28990			RNA-binding protein-related (....		Lus10023657 [exp]	28.1	0.7480

Compare expression of checked genes

Lus10010918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.