Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24100 182 / 9e-53 ASG1 ALTERED SEED GERMINATION 1, unknown protein AT4G30780 169 / 6e-47 unknown protein AT3G05770 137 / 1e-36 unknown protein AT1G54300 130 / 8e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029847 [exp] 193 / 3e-54 AT2G24100 160 / 6e-42 ALTERED SEED GERMINATION 1, unknown protein Lus10035819 [exp] 178 / 3e-50 AT4G30780 514 / 3e-177 unknown protein Lus10029846 [exp] 176 / 4e-50 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein Lus10036602 [exp] 174 / 5e-49 AT4G30780 511 / 5e-176 unknown protein Lus10020694 [exp] 157 / 5e-43 AT2G24100 145 / 5e-38 ALTERED SEED GERMINATION 1, unknown protein Lus10041622 [exp] 155 / 9e-43 AT2G24100 351 / 1e-116 ALTERED SEED GERMINATION 1, unknown protein Lus10024097 [exp] 152 / 3e-41 AT2G24100 335 / 2e-110 ALTERED SEED GERMINATION 1, unknown protein Lus10024256 [exp] 96 / 6e-23 AT2G24100 59 / 3e-10 ALTERED SEED GERMINATION 1, unknown protein Lus10031413 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009000 [exp] 228 / 1e-69 AT2G24100 202 / 6e-59 ALTERED SEED GERMINATION 1, unknown protein Potri.005G014600 [exp] 194 / 8e-57 AT2G24100 167 / 5e-46 ALTERED SEED GERMINATION 1, unknown protein Potri.018G102800 [exp] 178 / 9e-51 AT4G30780 501 / 1e-172 unknown protein Potri.006G180500 [exp] 176 / 6e-50 AT4G30780 503 / 2e-173 unknown protein Potri.001G041800 [exp] 167 / 1e-46 AT2G24100 363 / 5e-121 ALTERED SEED GERMINATION 1, unknown protein Potri.003G185050 [exp] 164 / 1e-45 AT2G24100 392 / 2e-132 ALTERED SEED GERMINATION 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010920 pacid=23172483 polypeptide=Lus10010920 locus=Lus10010920.g ID=Lus10010920.BGIv1.0 annot-version=v1.0 ATGCTTCACCCCTTCTTCCCCGAAGATGACGATGAACATAGCCACGAAAATTACCAGTGGGTCCAACCTCATCACTTGACCCCTCACCAGGTGAGATTGC GGGAGGAGCTGCAGAGACTGAGACCGCTCGGATTGCGGCTCGATGTTTCGAGCTTGTTTCCGAGGGAGGAGGAGAGCGATCTTGATCGAAACGTCGTCGG ATTGGCTCCCCAGATGGAGAAGGTGAAAGCTGCTAGCGTTCCCGCCAGAATACTCAAGATTGGTTCTTGGCAGAGAGTTACTAAGAATCCTAGTGACTTG GTGGCCAAATGGTATTTTGCGAAGAGGAAACTGGTCTGGGAGATCTTGGAAGGGACATTGAAGAGCAAGATTGAAGTTCAGTGGTTTGATATCATTGCCA TCAATGCCTACATTCGACCCAATGAGCCCGGTGTTCTTCAAGTCGAGTTAAACCGGAGTCCTACTTTCCATGAAGAAACTGATCCACAGCCAAGAAAGCA CACAATCTGGAAACCAGCATCAGATTTCACAGGAGGCCAAGCTTCAACCTGCAGGAGGCATGTAATCATATTTCCACCAGGAGAGCTTGATAAGCCATAT GAGAAGCTGTTGCAGTATGACCAAAGGCTGATGCTTCTGAGCCAAAGACCATTCCCCAGTCTGCAGAACCCTCACTTTCCGACTTTCGATGGGGCTTCCG AGTTCTGCCTTGGTTACCATCCTCCGATGGCGAATCCATCGCCGATATCCGACAATAATGGTGCGACAATGTGGGATGAACAAGTGAACAGCAATGAAGT TGGCTACAACAATTCGGGACTCTATCCGGCATTAGTTACAGCAAGGACCTACGATATCAGCGGAGGCATAGACAGCAATCCATATTCAAGCACAGGTAGT TACCAGCATCAAATTGGGAGCCAACAAAATAGCTATCTACTATCGCAGCGATTGAAAGCGTTGGAGAGTATGGGAGCGCCGGAACAGGATATTGACACAG AGTTTTATGATAGACAGCAGCATCAACAGCAAGTTTTCGTTCCAAACCATGCTGATGTGGAGCTCTATCAGCAGCAACATCATCCAGGGAGGTTTGGGTA TCCTTATCCTGATGGGGTTTTCAATCACGGAATGGAGCATTTCGACCGGCATCAATGA
AA sequence Show only first row Show all	>Lus10010920 pacid=23172483 polypeptide=Lus10010920 locus=Lus10010920.g ID=Lus10010920.BGIv1.0 annot-version=v1.0 MLHPFFPEDDDEHSHENYQWVQPHHLTPHQVRLREELQRLRPLGLRLDVSSLFPREEESDLDRNVVGLAPQMEKVKAASVPARILKIGSWQRVTKNPSDL VAKWYFAKRKLVWEILEGTLKSKIEVQWFDIIAINAYIRPNEPGVLQVELNRSPTFHEETDPQPRKHTIWKPASDFTGGQASTCRRHVIIFPPGELDKPY EKLLQYDQRLMLLSQRPFPSLQNPHFPTFDGASEFCLGYHPPMANPSPISDNNGATMWDEQVNSNEVGYNNSGLYPALVTARTYDISGGIDSNPYSSTGS YQHQIGSQQNSYLLSQRLKALESMGAPEQDIDTEFYDRQQHQQQVFVPNHADVELYQQQHHPGRFGYPYPDGVFNHGMEHFDRHQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10010920 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10016353 [exp]	4.2	0.8044
AT5G39150			RmlC-like cupins superfamily p...		Lus10006543 [exp]	9.6	0.8321
AT5G05340			Peroxidase superfamily protein...		Lus10009936 [exp]	17.0	0.7473
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10030078 [exp]	19.2	0.7702
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10017022 [exp]	21.6	0.7169
AT5G39150			RmlC-like cupins superfamily p...		Lus10003114 [exp]	25.3	0.7983
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	43.6	0.7563
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004177 [exp]	47.6	0.7695
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019020 [exp]	48.1	0.7719
AT1G14220			Ribonuclease T2 family protein...		Lus10035882 [exp]	50.5	0.7358

Compare expression of checked genes

Lus10010920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.