Plant FIBer expression Database

Lus10010921 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G56420 191 / 4e-62 unknown protein
AT1G12530 77 / 2e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031412
[exp]
265 / 7e-91 AT1G56420 204 / 2e-67 unknown protein
Lus10006705
[exp]
68 / 2e-13 AT1G12530 144 / 2e-42 unknown protein
Lus10007047
[exp]
67 / 2e-13 AT1G12530 146 / 6e-44 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G009100
[exp]
194 / 9e-63 AT1G56420 206 / 8e-68 unknown protein
Potri.003G118900
[exp]
85 / 9e-20 AT1G12530 158 / 4e-48 unknown protein
PFAM info
Representative CDS sequence
>Lus10010921 pacid=23172463 polypeptide=Lus10010921 locus=Lus10010921.g ID=Lus10010921.BGIv1.0 annot-version=v1.0
ATGGAATCTTCGTCTTCTTCGTCATCAGTGATAACCCCAGAAGACGTGTTGGAAAGCCTGATGAACGATGGGACAATTGATGCTCTCAGGTTGAAGATCA
TTACTCAGCTCAAGGCCAATGAAGAGCTGAAGAAGACGACTATCAAAATGGCCGAGAAGAGCAAGGTTCTGAACACGCCCGGTGCTGAGAAACAGACCAA
AAGAGAATTATTTGACGCACTTCGGCAAGAACTTGAAACTCCAGTGCTCGAGAAGGCTTCCAAATCAGTGTGGGAACTGATTCTGGACAACAACGGACTG
GGCAAAGAAATCAGCGAAATGGTTGAAAAAGTGTTCTCTAGACTAAGCGGGCAAGAGCTTCCGTTGTTTCCTCCACCTCCGGTTCCTGAAATGAAGGAGA
ACAAGGAGGAAGAGAAAGAAGAGGCGATAGCTAGTCTGAGGGACAAATCGGGCTCGAAACTGAAGAAAAGGCGTCACAGTGAGATGGACAAGGAGAAAGG
AGGTAATGAGGTGTCAAGCCGGCAAGGAAGTGAAGCTGCAGCTAAAAAATCTGCCGACCTTCCTCCGCCTCCTCGCCCGAGTAAATCTCCTCCAACTTCA
AAGACTTGA
AA sequence
>Lus10010921 pacid=23172463 polypeptide=Lus10010921 locus=Lus10010921.g ID=Lus10010921.BGIv1.0 annot-version=v1.0
MESSSSSSSVITPEDVLESLMNDGTIDALRLKIITQLKANEELKKTTIKMAEKSKVLNTPGAEKQTKRELFDALRQELETPVLEKASKSVWELILDNNGL
GKEISEMVEKVFSRLSGQELPLFPPPPVPEMKENKEEEKEEAIASLRDKSGSKLKKRRHSEMDKEKGGNEVSSRQGSEAAAKKSADLPPPPRPSKSPPTS
KT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G56420 unknown protein Lus10010921
[exp]
0 1
AT3G47160 RING/U-box superfamily protein... Lus10037053
[exp]
4.0 0.9350
AT2G37150 RING/U-box superfamily protein... Lus10023507
[exp]
7.9 0.9448
AT2G24550 unknown protein Lus10026939
[exp]
10.5 0.9378
AT3G25910 Protein of unknown function (D... Lus10019436
[exp]
13.4 0.9336
AT1G13450 Trihelix GT-1 GT-1, Homeodomain-like superfa... Lus10036978
[exp]
19.8 0.9380
AT5G24890 unknown protein Lus10009793
[exp]
26.6 0.9284
AT3G47160 RING/U-box superfamily protein... Lus10036934
[exp]
26.9 0.9210
AT2G22500 UCP5, ATPUMP5, ... DICARBOXYLATE CARRIER 1, PLANT... Lus10043336
[exp]
29.0 0.9225
AT3G01650 RGLG1 RING domain ligase1 (.1) Lus10006463
[exp]
30.0 0.9320
AT3G06590 bHLH bHLH148, AIF2 basic helix-loop-helix (bHLH) ... Lus10010907
[exp]
32.0 0.8776

Lus10010921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.