Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56350 646 / 0 Peptide chain release factor 2 (.1) AT5G36170 243 / 5e-75 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT2G47020 166 / 3e-46 Peptide chain release factor 1 (.1.2) AT3G62910 124 / 1e-30 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) AT3G57190 111 / 2e-26 PrfB3 peptide chain release factor 3, peptide chain release factor, putative (.1) AT1G33330 64 / 2e-11 Class I peptide chain release factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031411 [exp] 886 / 0 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10036446 [exp] 247 / 2e-76 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10041119 [exp] 238 / 8e-74 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10009980 [exp] 166 / 8e-46 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2) Lus10038039 [exp] 165 / 2e-45 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10005944 [exp] 126 / 1e-31 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10029444 [exp] 120 / 1e-29 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10008558 [exp] 59 / 2e-09 AT1G33330 267 / 2e-89 Class I peptide chain release factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009200 [exp] 708 / 0 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.008G075800 [exp] 249 / 3e-77 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.014G114000 [exp] 161 / 3e-44 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.006G045200 [exp] 129 / 1e-32 AT3G57190 426 / 7e-148 peptide chain release factor 3, peptide chain release factor, putative (.1) Potri.014G133400 [exp] 125 / 2e-31 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.002G188200 [exp] 104 / 3e-24 AT2G47020 380 / 3e-130 Peptide chain release factor 1 (.1.2) Potri.019G063800 [exp] 68 / 2e-12 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1) Potri.010G181600 [exp] 48 / 3e-07 AT5G36170 88 / 2e-22 high chlorophyll fluorescent 109 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03462 [flax] [poplar] PCRF PCRF domain CL0337 [flax] [poplar] RF PF00472 [flax] [poplar] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Lus10010922 pacid=23172468 polypeptide=Lus10010922 locus=Lus10010922.g ID=Lus10010922.BGIv1.0 annot-version=v1.0 ATGTCAGCTTTGATGCTCAGAAGATCAAGGAACCTCCTTGCAGCAGTCCTGAACAATCCAATAAGGAATAACCACGAGGTTCTAGTTTCTAAGGTTCCTT CAATTCCACGCAAATCTCCAATCCACGAGCTTTTGTTCCAGAGGAAGGTTCTTCGCTGTTTTGGTTCACACGCGGCCGCTGAGGCGACGGCTAAGGTGGT ATCTACTTCCGACGGATTGACCGTTGATGGGATTGTTGCAAGTAACTGGGCCATTCTTGACGAGAGTGAGAATGACTGGAAGAGCCATGCTGCTGCTATT GCTCAGTCCATTCAAGTGATCAAGAGGCGGTTGCAGTGGGGGAAATTGATGGTTAGGCTAGATGTGCTATCAGCTCAGCTGAACAAGCCAGACCTATGGG ATGATCCGGTCCTTGCCGGAAGGATAAGTCGCGAGCACGGTTCTTTAATGGGGAAGATGAAGGAGGTGAGAGCATTGGAGAGGCAGCTGCTTGATCACAT TGATATGATAAAGCTTGCTCGTGAAGAGGAGGAAGACTCCGACTTGGAATCGAATGTAGCATTAAAAGCTTATCTGCGATTAGTTCCAATGAATGAACTA CCTTTCGAACTATTTTCCTTGCCCCGGTTCGTGCATTTTACAGTTGCAGCTCTTGTTATGCAGGAATCATTGAACGCCTTGCTTGAGATGAGAAGGAATT CTAACGAGAAAGAGCTTGAAGCTTTGTTATCTGGGGAGCATGATTCTTGTCCATGTTACATTGAGGTTCAAGCCGGAGCTGGTGGTACCGAGAGTATGGA CTGGGCGAAAATGGTGATGCAAATGTACAAACAGTGGGCTCAACGACGTGGGTTTAAAGTAACAACAGTCGACGAGATGGCTGGTGAGATTGCAGGAATC AAGCGGGCAACGATCAGGCTGGATGGCGAATACCCATTTGGCTACGCGAAAGCAGAAGTTGGAGTGCACAGGTTGGTCCGAATCTCACCTTTCGACAGTG GGAAGAGGCGGCACACTTCTTTTGCAGCGGTTGCTGTGATTCCGATTCTGGGAGACGGATTCACACACGTCCAGATCAATGAATCTGACCTTCGAATCGA ACGGTTTCGTGCTGGGGGAGCTGGCGGGCAGCACGTCAACACGACGGAGAGTGCTGTGAGGATCGTCCATATCCCTACAGGAGTCACTGCTACTTGTCAA AACGAAAGATCACAACATATGAACAAGGCCTCAGCAATGTCGGTGCTGCAATCTCGACTCGACCAACTTGAGATGGCGCGCCAGGCTCAAGTGAACTCTC AACATACGCAGTCGTTGACCGATATAAGTTGGGGCAACCAAATTCGGACATACGTACTCCACCCTTACCGGATGGTGAAGGATCTACGAACGGGATATGA GGTTTTCGACCCGGATTCGGTGCTTGAAGGGGAGCTAGATGGGTTCATATTGAGCTACTTATCAGCTTCCTTGGACAAGGATGAAGATGATGAGCACCAA TAA
AA sequence Show only first row Show all	>Lus10010922 pacid=23172468 polypeptide=Lus10010922 locus=Lus10010922.g ID=Lus10010922.BGIv1.0 annot-version=v1.0 MSALMLRRSRNLLAAVLNNPIRNNHEVLVSKVPSIPRKSPIHELLFQRKVLRCFGSHAAAEATAKVVSTSDGLTVDGIVASNWAILDESENDWKSHAAAI AQSIQVIKRRLQWGKLMVRLDVLSAQLNKPDLWDDPVLAGRISREHGSLMGKMKEVRALERQLLDHIDMIKLAREEEEDSDLESNVALKAYLRLVPMNEL PFELFSLPRFVHFTVAALVMQESLNALLEMRRNSNEKELEALLSGEHDSCPCYIEVQAGAGGTESMDWAKMVMQMYKQWAQRRGFKVTTVDEMAGEIAGI KRATIRLDGEYPFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPILGDGFTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQ NERSQHMNKASAMSVLQSRLDQLEMARQAQVNSQHTQSLTDISWGNQIRTYVLHPYRMVKDLRTGYEVFDPDSVLEGELDGFILSYLSASLDKDEDDEHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56350			Peptide chain release factor 2...		Lus10010922 [exp]	0	1
AT1G60080			3'-5'-exoribonuclease family p...		Lus10034605 [exp]	16.6	0.7101
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10004416 [exp]	19.4	0.6873
AT5G66540			unknown protein		Lus10042107 [exp]	22.6	0.6651
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10012172 [exp]	23.8	0.6954
AT5G13830			FtsJ-like methyltransferase fa...		Lus10023402 [exp]	25.9	0.6558
					Lus10037800 [exp]	29.0	0.6410
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10022801 [exp]	38.8	0.6155
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10026003 [exp]	39.0	0.6226
AT5G39960			GTP binding;GTP binding (.1)		Lus10014634 [exp]	47.2	0.6465
AT1G13810			Restriction endonuclease, type...		Lus10010434 [exp]	47.5	0.6527

Compare expression of checked genes

Lus10010922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.