Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56340 568 / 0 AtCRT1a, CRT1 calreticulin 1a (.1.2) AT1G09210 550 / 0 AtCRT1b calreticulin 1b (.1) AT1G08450 422 / 1e-144 AtCRT3, PSL1, EBS2, CRT3 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) AT5G61790 188 / 4e-53 CNX1, ATCNX1 calnexin 1 (.1) AT5G07340 178 / 1e-49 Calreticulin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031410 [exp] 651 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10010924 [exp] 616 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031409 [exp] 615 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10020222 [exp] 427 / 1e-145 AT1G08450 586 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10026849 [exp] 426 / 1e-143 AT1G08450 590 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10043021 [exp] 192 / 1e-54 AT5G61790 793 / 0.0 calnexin 1 (.1) Lus10032521 [exp] 191 / 4e-54 AT5G61790 794 / 0.0 calnexin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G015100 [exp] 561 / 0 AT1G56340 566 / 0.0 calreticulin 1a (.1.2) Potri.013G009500 [exp] 557 / 0 AT1G09210 579 / 0.0 calreticulin 1b (.1) Potri.019G055200 [exp] 441 / 3e-152 AT1G08450 569 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.017G026300 [exp] 432 / 3e-148 AT1G08450 615 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.007G131500 [exp] 428 / 5e-147 AT1G08450 619 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.015G109200 [exp] 189 / 1e-53 AT5G61790 710 / 0.0 calnexin 1 (.1) Potri.012G111100 [exp] 175 / 3e-48 AT5G61790 677 / 0.0 calnexin 1 (.1) Potri.001G070600 [exp] 150 / 1e-39 AT5G61790 582 / 0.0 calnexin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00262 [flax] [poplar] Calreticulin Calreticulin family
Representative CDS sequence Show only first row Show all	>Lus10010923 pacid=23172482 polypeptide=Lus10010923 locus=Lus10010923.g ID=Lus10010923.BGIv1.0 annot-version=v1.0 ATGGCCAACCCTACTTCGCGCTGTCTGATTCTGCTCTCGCTCCTCGCCGTCGCCTCCGCCACCGTCTTCTTTGAGGAGAAATTCGAAGACGGATGGGAAA AAAGATGGGTGAAATCCGATTGGAAGAAAGATGAGAACATGGCTGGAGAGTGGAACTACACCACTGGTAAATGGAATGGAGGTGCTGATGACAAAGGTAT CCAGACAAGTGAAGACTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAACTCAGCAACAAGGACAAAACACTGGTGTTCCAGTTCTCTGTCAAGCAT GAGCAGAAGCTTGACTGTGGTGGTGGCTACATGAAATTGCTCAGTGGTGATGTTGACCAGACCAAGTTTGGCGGTGACACCCCATACAGTATTATGTTTG GACCCGATATCTGTGGCTACAGCACCAAGAAAGTCCATGCCATTCTCACCTATAACGGAACAAACTACTTGATCAAGAAGGAAGTTCCCTGCGAGACTGA CCAGCTCTCACATGTGTACACATTCATCATCCGCCCGGATGCCACTTACAGTATCCTTATTGACAACGTCGAGAAGCAAACCGGCAGTCTGTACACTGAC TGGAGCCTTCTCCCTCCAAAGAAGATCAAGGACCCAGAAGCTAAGAAGCCTGAGGATTGGGATGACAAGGAGTACATCGCTGACCCTGAGGACATCAAGC CAGAGGGATATGATGACATCCCTAAGGAGATTCCCGATCCTGAAGCCAAGAAGCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACTGCCCCCAC TATGTCCAACCCTGAGTACAAAGGTCCATGGACGGCAAAGAAAATTAAGAACCCCGCCTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCAGAG TTCAAGGACGACCCCGAGATCTACGTCTTCCCCAACCTCAAGTACGTCGGCATTGAGTTGTGGCAGGTGAAATCCGGTACCTTGTTCGACAATGTCTTAA TCTGTGACGATCCTGAGTACGCCAAGAAGTTTGCCGAAGAGACATGGGGAAAGAACAAAGATGCTGAGAAGGCAGCATTTGATGAAGCTGAGAAGAAGAG AGAAGAGGAGGAATCCAAGAGCGATCCAGCAGACACCGACGCCGATGATGACGACGAGGACTCTGCAGAAGACGACGCCGAAGATGACTCGGAACTCAAA GGGGAAGAGACCGACGACGAGGGAGTACATGTAAGTTACTCTTCCCCAATCAAACACTTCTTTGTCCTCGTTGTTCGAACCGAACCGGATCAACCGGTTC ATGAAACCACTGGTTGCTGCTTCATATACATTTCCCATCTCTGTGCAGGACGAGCTATAGGAAGAGAGATGGAGTTAGTAGAAACCAAAGCCAAAGCCAA AGCCAAGCCAGAAAGAAGTGATTGCACTCGTTGCTGCTTAATATACATTTTCCCACCTCTTTTCTGCTTTTACCTACGGTGGATGACGATTCAGTGGTCA CTTTGTTTTACTCTGAGCTTTTATCTAGAAATTTGGAACCATGTCTTGTAG
AA sequence Show only first row Show all	>Lus10010923 pacid=23172482 polypeptide=Lus10010923 locus=Lus10010923.g ID=Lus10010923.BGIv1.0 annot-version=v1.0 MANPTSRCLILLSLLAVASATVFFEEKFEDGWEKRWVKSDWKKDENMAGEWNYTTGKWNGGADDKGIQTSEDYRFYAISAEYPELSNKDKTLVFQFSVKH EQKLDCGGGYMKLLSGDVDQTKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNYLIKKEVPCETDQLSHVYTFIIRPDATYSILIDNVEKQTGSLYTD WSLLPPKKIKDPEAKKPEDWDDKEYIADPEDIKPEGYDDIPKEIPDPEAKKPEDWDDEEDGEWTAPTMSNPEYKGPWTAKKIKNPAYKGKWKAPMIDNPE FKDDPEIYVFPNLKYVGIELWQVKSGTLFDNVLICDDPEYAKKFAEETWGKNKDAEKAAFDEAEKKREEEESKSDPADTDADDDDEDSAEDDAEDDSELK GEETDDEGVHVSYSSPIKHFFVLVVRTEPDQPVHETTGCCFIYISHLCAGRAIGREMELVETKAKAKAKPERSDCTRCCLIYIFPPLFCFYLRWMTIQWS LCFTLSFYLEIWNHVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010923 [exp]	0	1
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10032430 [exp]	1.0	0.9633
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Lus10032521 [exp]	1.4	0.9533
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007396 [exp]	4.5	0.9394
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	5.5	0.9445
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10036805 [exp]	6.0	0.9187
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	6.7	0.9371
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	6.7	0.9142
AT3G24480			Leucine-rich repeat (LRR) fami...		Lus10017727 [exp]	8.1	0.9237
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Lus10043021 [exp]	9.0	0.9066
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	10.6	0.9229

Compare expression of checked genes

Lus10010923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.