Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56340 602 / 0 AtCRT1a, CRT1 calreticulin 1a (.1.2) AT1G09210 589 / 0 AtCRT1b calreticulin 1b (.1) AT1G08450 465 / 4e-161 AtCRT3, PSL1, EBS2, CRT3 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) AT5G61790 228 / 9e-68 CNX1, ATCNX1 calnexin 1 (.1) AT5G07340 199 / 3e-57 Calreticulin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031409 [exp] 677 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031410 [exp] 660 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10010923 [exp] 657 / 0 AT1G56340 616 / 0.0 calreticulin 1a (.1.2) Lus10020222 [exp] 463 / 2e-159 AT1G08450 586 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10026849 [exp] 462 / 2e-157 AT1G08450 590 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10043021 [exp] 207 / 8e-60 AT5G61790 793 / 0.0 calnexin 1 (.1) Lus10032521 [exp] 204 / 1e-58 AT5G61790 794 / 0.0 calnexin 1 (.1) Lus10010925 [exp] 100 / 2e-24 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009500 [exp] 605 / 0 AT1G09210 579 / 0.0 calreticulin 1b (.1) Potri.005G015100 [exp] 587 / 0 AT1G56340 566 / 0.0 calreticulin 1a (.1.2) Potri.019G055200 [exp] 482 / 4e-168 AT1G08450 569 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.007G131500 [exp] 472 / 4e-164 AT1G08450 619 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.017G026300 [exp] 453 / 3e-156 AT1G08450 615 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.015G109200 [exp] 211 / 2e-61 AT5G61790 710 / 0.0 calnexin 1 (.1) Potri.012G111100 [exp] 193 / 8e-55 AT5G61790 677 / 0.0 calnexin 1 (.1) Potri.001G070600 [exp] 174 / 6e-48 AT5G61790 582 / 0.0 calnexin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00262 [flax] [poplar] Calreticulin Calreticulin family
Representative CDS sequence Show only first row Show all	>Lus10010924 pacid=23172501 polypeptide=Lus10010924 locus=Lus10010924.g ID=Lus10010924.BGIv1.0 annot-version=v1.0 ATGGCGAACCCTAATTCGCTCTGTTTGATTCTGTTCTCGCTCCTCGCAGTTGCCTCTGCCACTGTCTTCTTTGAAGAGAAGTTCGAAGATGGGTGGGAAA ACCGATGGGTTAAATCCGATTGGAAGAAGGATGAGAACACGGCTGGAGAGTGGAACTACACCTCCGGAAAATGGAATGGAGACGCTGATGACAAGGGTAT CCAGACAAGTGAAGACTACAGATTCTATGCTATTTCAGCTGAGTACCCAGAACTCAGCAACAAGGACAAAACTTTGGTGTTCCAGTTCTCTGTCAAGCAT GAACAGAAGCTTGACTGCGGTGGTGGCTACATGAAGTTGCTCAGTGGTGATGTTGACCAGACCAAATTTGGCGGTGGCACTCCATACAGCATTATGTTTG GACCTGATATCTGCGGATACAGTACCAAGAAGGTCCATGCCATCCTCACCTACAACGGAACAAACCACTTGATCAAGAAGGAAGTTCCTTGCGAGACTGA CCAGCTCTCCCATGTTTACACATTCATCATCCGTCCTGATGCTACTTATAGTATCCTTATTGACAACGTCGAGAAGCAAACCGGCAGCCTGTACACCGAC TGGAGCCTTCTTCCCCCAAAGAAAATCAAGGATCCTGAAGCAAAGAAGCCTGAGGATTGGGACGAGAAGGAGTATATTCCTGATCCCGAGGACATTAAGC CAGAGGGATATGATGACATCCCTGCGGAGATTCCAGACCATGAAGCCAAGAAGCCTGAAGATTGGGATGATCAGGAGGATGGTGAATGGACTGCCCCAAC CATGCCCAATCCTGAGTACAAAGGTCCATGGACTGCAAAGAAAATCAAGAACCCCAACTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCAGAA TTCAAGGACGACCCCGAAATCTACGTCTTCCCCAACCTGAAGTACGTCGGCATTGAGCTATGGCAGGTGAAATCCGGTACCTTGTTCGACAATGTATTGA TCTGCGACGATCCCGAGTACGCCAAGAAGTTTGCCGAAGAAACATGGGCAAAGAACAAGGATGCTGAGAAAGCAGCATTCGACGAAGCTGAGAAGAAGAG AGAGGAGGGGGAATCCAAGAATGAACCTGCTGACACCGATTTCGATCTGGTTTCGACCGAGTGGAAGACTAACGATCCTCATGTTTGTGCAGGACGAGCT ATAGGAAGAGGAGATGGAATAGGAGGAAAGCACAGCCAGAGAATTAATCAACTGGAAATAGACTCTGATAGCCTGCAGGGAGCTATTGCTCACAGCGTTG GCATAGGCTACATGGTTTACCTCAGCTGGTGGGTTCGTGTTGGCGAAATCAACTACAAGTACCCCTTTGTGTTCTGCCTGTACGCAGCCTCGGTTGCTCG GTTCCTCAGGGTCCCGCCCAGATCAGATATCTCAGCTCCCTGGATTGTGATGAATGTGATTGTTGCGGTTTCGAGCCAAGGGGTTCGGGGCTCTCATCTT TATCTGCTGGGTGCTGCATTTTTTGGGATTGAAACTGTGAGGATTTGTCTATCATCATACAAGCCAGATCATGAAGGAGTGGAAAATTCCAGCACTGCCA AGTAG
AA sequence Show only first row Show all	>Lus10010924 pacid=23172501 polypeptide=Lus10010924 locus=Lus10010924.g ID=Lus10010924.BGIv1.0 annot-version=v1.0 MANPNSLCLILFSLLAVASATVFFEEKFEDGWENRWVKSDWKKDENTAGEWNYTSGKWNGDADDKGIQTSEDYRFYAISAEYPELSNKDKTLVFQFSVKH EQKLDCGGGYMKLLSGDVDQTKFGGGTPYSIMFGPDICGYSTKKVHAILTYNGTNHLIKKEVPCETDQLSHVYTFIIRPDATYSILIDNVEKQTGSLYTD WSLLPPKKIKDPEAKKPEDWDEKEYIPDPEDIKPEGYDDIPAEIPDHEAKKPEDWDDQEDGEWTAPTMPNPEYKGPWTAKKIKNPNYKGKWKAPMIDNPE FKDDPEIYVFPNLKYVGIELWQVKSGTLFDNVLICDDPEYAKKFAEETWAKNKDAEKAAFDEAEKKREEGESKNEPADTDFDLVSTEWKTNDPHVCAGRA IGRGDGIGGKHSQRINQLEIDSDSLQGAIAHSVGIGYMVYLSWWVRVGEINYKYPFVFCLYAASVARFLRVPPRSDISAPWIVMNVIVAVSSQGVRGSHL YLLGAAFFGIETVRICLSSYKPDHEGVENSSTAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010924 [exp]	0	1
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	1.4	0.9681
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10026039 [exp]	1.7	0.9599
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	3.7	0.9600
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10035579 [exp]	3.7	0.9317
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10038004 [exp]	4.6	0.9438
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	4.9	0.9558
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10015545 [exp]	4.9	0.9534
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	5.5	0.9537
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10004044 [exp]	6.0	0.9298
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	8.4	0.9359

Compare expression of checked genes

Lus10010924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.