Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031409 [exp] 132 / 4e-36 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10010924 [exp] 96 / 2e-23 AT1G56340 621 / 0.0 calreticulin 1a (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010925 pacid=23172489 polypeptide=Lus10010925 locus=Lus10010925.g ID=Lus10010925.BGIv1.0 annot-version=v1.0 ATGGCTTCAATTGCCAACATCAAGAAACTGGCATACGAAAACCACTCTGTGTTCCTAGTCCTCTCCGTCTTATGTGCAGCTTTCATCCTTGTCTTCGATG TCTTTGACGTCTGCAACATTTGGGGGAACCAACTTCCCTCATTGCTAAAGATTGCATCTTTAGCCATTCCTTTTCATGCCCTCTTCACTTGTTTCTACAG GGAACAACGGCAGTTGTTCGATCTCAGCATTTCGAAAGCTTGTGCTTGGTTCGTTTCTGTAGGCTACATTATTCACCTGAGCTCACTGGTGCGTAGTGCA GACATCAACTACGAGTACCTCTTTGTGTTCTGCCTCTATGGAGCCTCGGTCTCTCGGTTCCTCAGGCTCCCGTTCAGATTGAACATCTCGACTTGCTGGA GTGCGTTGACTGTCATCTATGCATTTTCGGGTTCGAACCTAGGGGCTCGGACCTCTCATCCTTATCTGCTGGTTGCTGCCTTGCTCTTGATCCAAAATGT CAAGATTTTTCTGGCAGCATACAAGCCATAA
AA sequence Show only first row Show all	>Lus10010925 pacid=23172489 polypeptide=Lus10010925 locus=Lus10010925.g ID=Lus10010925.BGIv1.0 annot-version=v1.0 MASIANIKKLAYENHSVFLVLSVLCAAFILVFDVFDVCNIWGNQLPSLLKIASLAIPFHALFTCFYREQRQLFDLSISKACAWFVSVGYIIHLSSLVRSA DINYEYLFVFCLYGASVSRFLRLPFRLNISTCWSALTVIYAFSGSNLGARTSHPYLLVAALLLIQNVKIFLAAYKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010925 [exp]	0	1
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10008589 [exp]	1.0	0.8663
AT5G18560	AP2_ERF	PUCHI	Integrase-type DNA-binding sup...		Lus10026053 [exp]	4.5	0.7902
AT1G51405			myosin-related (.1)		Lus10003186 [exp]	5.7	0.8433
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	6.7	0.7608
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10042224 [exp]	7.3	0.8345
AT4G38380			MATE efflux family protein (.1...		Lus10020203 [exp]	10.8	0.8286
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10012860 [exp]	19.6	0.6854
					Lus10035529 [exp]	19.6	0.7694
AT4G18593			dual specificity protein phosp...		Lus10001888 [exp]	20.5	0.7303
AT1G32583			unknown protein		Lus10001911 [exp]	27.2	0.7721

Compare expression of checked genes

Lus10010925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.