Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56140 342 / 4e-107 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 339 / 7e-106 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 335 / 2e-104 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 314 / 1e-96 Leucine-rich repeat transmembrane protein kinase (.1.2) AT4G21390 308 / 2e-95 B120 S-locus lectin protein kinase family protein (.1) AT3G09010 295 / 2e-95 Protein kinase superfamily protein (.1) AT1G70520 300 / 2e-94 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G16670 292 / 2e-94 Protein kinase superfamily protein (.1) AT1G53440 308 / 3e-94 Leucine-rich repeat transmembrane protein kinase (.1) AT1G61360 302 / 3e-94 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031401 [exp] 773 / 0 AT1G56140 337 / 4e-105 Leucine-rich repeat transmembrane protein kinase (.1) Lus10020688 [exp] 647 / 0 AT1G56140 323 / 1e-101 Leucine-rich repeat transmembrane protein kinase (.1) Lus10003711 [exp] 320 / 1e-105 AT1G70740 502 / 2e-178 Protein kinase superfamily protein (.1.2) Lus10031199 [exp] 338 / 2e-105 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10001595 [exp] 317 / 1e-103 AT1G70740 518 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010960 [exp] 312 / 1e-99 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10038940 [exp] 298 / 1e-96 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10042460 [exp] 297 / 2e-96 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10011193 [exp] 296 / 3e-96 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132900 [exp] 577 / 0 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G071300 [exp] 567 / 0 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.007G067900 [exp] 345 / 5e-108 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G276600 [exp] 329 / 7e-106 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.003G148000 [exp] 338 / 1e-105 AT1G56145 1063 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G082900 [exp] 335 / 4e-104 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G109700 [exp] 315 / 3e-103 AT1G70740 523 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G141400 [exp] 319 / 1e-101 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.004G040200 [exp] 309 / 2e-101 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.008G132300 [exp] 309 / 3e-101 AT1G70740 499 / 6e-177 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10010927 pacid=23172495 polypeptide=Lus10010927 locus=Lus10010927.g ID=Lus10010927.BGIv1.0 annot-version=v1.0 ATGGCGAAGAAAGCTGGAAAAAAGTTGGTTTACGACAGATGCAATCGAGCATATAGGCTGTCAATCAGTGGCGACATCAATGTGCCTGCAGAAGCTACAG ACGTGTTCTACAATGGACCGTGCCTCGATGAAACTCGACATGTTTTGGACTGTGTAGATGACTCGTTCTCCTACTTTACATTCTTCAATCGAGCCATGGT TAAGGATGTCCGGCGCGTTCTCAGCTCGGCCTGCACCTCCACCAGCCGCAGAGTGGCGGCGAATCCTCCTCCTCCTCCTGGCCAGTCTCGCGGCGGCGGT TTTGCTCCGATGAGCTCTTCGGCGTTGTTCTTCTTCGCCGGAGTTCTGGTCGTGCTCGTTATACTGATGATCATCATCACCATCTTCTGGAAGTTCGTCA AGCTGAACGACATCACTGATCAGTTGGTCAAGACTGATAAACTGTCTAAAGGAGTGGCATCTGAAGTAATGAGCGGGACATTGCGAACAATCAGTTACTT TGATTACCAGACACTAAAGAAGGCAACCAAGAACTTCCACCCCGATAATCTCCTAGGCAGAGGTGGATTTGGACCGGTTTATCGGGGGAAGTTGAGAGAC GGTCGAACCGTGGCGGTGAAACGGCTGTCGCTGGAGAAGTCACAACAAGGCGAATCGGAGTTTTTGTCGGAGGTGAGGATGATCACGAGCATACAACACA AGAACCTCGTCCGGCTCCTCGGATGCTGTTCCGACGGGGAACAACGGTTGCTTGTCTACGAGTACATGAAGAACAGGAGCTTGGATCTTCTGGTCTATGG GAATAGCAATCAGTTCATGGATTGGAACACAAGGTTCCGGATAATACTCGGAATTGCTCGCGGCCTGCAGTACCTGCACGAAGATTCGCCACTGAGAATC GTTCATCGAGACATTAAAGCAAGCAATGTTCTCCTTGATGACAAGTACCAGCCGCGGATCAGCGATTTCGGACTGGCCAGGTTCTTTCCTGAAGACCAGG CTTATCTCAGCACCACATTTGCTGGAACACTGGGATACACAGCTCCTGAGTATGCAATCAGAGGCGAGTTGTCGGAGAAGGCAGATATCTACAGTTTCGG AGTGTTGGCACTCGAGATCATATGCTGTAGGAAGAACACGGATCTCAGCTTATCAACAGAACAGCAATACCTTCCTGAATACGCGTGGAAGCTGTACGAG AAGAACAAGGTGAACGAGCTGATAGATCCAAAGCTTCGACAGCAAGGAATCGCAGAAAGAGAAGTGGTACACGTAATTCACGTGGCTTTCTTATGCCTCC AGCCGCTCGCGAATCTGAGGCCACCGATGTCTGAAGTCGTGGCGATGCTGACACGCAAAATCGATGCAGGGACGACGCCCATAAAGCCTGCGTTCTTGGT GGACAGCAGGAGGAGAGCAGCAGAAGGGAGCTTCTCTTGGGATGTTATATCCGAGGCTTTCCCTTCTCCTTTCCGGAGCCTCGAATCTCACCCTGCATCA TCTCAGGCAAACTGA
AA sequence Show only first row Show all	>Lus10010927 pacid=23172495 polypeptide=Lus10010927 locus=Lus10010927.g ID=Lus10010927.BGIv1.0 annot-version=v1.0 MAKKAGKKLVYDRCNRAYRLSISGDINVPAEATDVFYNGPCLDETRHVLDCVDDSFSYFTFFNRAMVKDVRRVLSSACTSTSRRVAANPPPPPGQSRGGG FAPMSSSALFFFAGVLVVLVILMIIITIFWKFVKLNDITDQLVKTDKLSKGVASEVMSGTLRTISYFDYQTLKKATKNFHPDNLLGRGGFGPVYRGKLRD GRTVAVKRLSLEKSQQGESEFLSEVRMITSIQHKNLVRLLGCCSDGEQRLLVYEYMKNRSLDLLVYGNSNQFMDWNTRFRIILGIARGLQYLHEDSPLRI VHRDIKASNVLLDDKYQPRISDFGLARFFPEDQAYLSTTFAGTLGYTAPEYAIRGELSEKADIYSFGVLALEIICCRKNTDLSLSTEQQYLPEYAWKLYE KNKVNELIDPKLRQQGIAEREVVHVIHVAFLCLQPLANLRPPMSEVVAMLTRKIDAGTTPIKPAFLVDSRRRAAEGSFSWDVISEAFPSPFRSLESHPAS SQAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56140			Leucine-rich repeat transmembr...		Lus10010927 [exp]	0	1
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10038560 [exp]	1.4	0.8424
AT1G59453			B-block binding subunit of TFI...		Lus10000370 [exp]	4.1	0.8431
AT2G28085			SAUR-like auxin-responsive pro...		Lus10001397 [exp]	16.5	0.8254
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031460 [exp]	25.1	0.8083
AT1G31120		KUP10	K+ uptake permease 10, K+ upta...		Lus10038362 [exp]	25.5	0.8376
AT2G36670			Eukaryotic aspartyl protease f...		Lus10035556 [exp]	35.7	0.7908
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10008689 [exp]	36.2	0.7563
					Lus10031246 [exp]	42.9	0.8052
AT4G34660			SH3 domain-containing protein ...		Lus10017500 [exp]	51.5	0.8092
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10032328 [exp]	56.8	0.7773

Compare expression of checked genes

Lus10010927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.