Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05760 249 / 9e-85 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031406 [exp] 311 / 5e-109 AT3G05760 277 / 7e-96 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010300 [exp] 263 / 3e-90 AT3G05760 231 / 7e-78 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF12171 [flax] [poplar] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
Representative CDS sequence Show only first row Show all	>Lus10010928 pacid=23172515 polypeptide=Lus10010928 locus=Lus10010928.g ID=Lus10010928.BGIv1.0 annot-version=v1.0 ATGGCTAATCCTCCCGGAGTCGACAACACGTTCAGGAAGAAGTTCGATCCAGAAGAGTACTTAGAACGAGCTCGTGAGCGAGAAAAGCAGGAGGCTGAAG GGAGATCAAAGTCTAAATCTAAAGGTCCTCCTGTACAGAGGCAGCCATTAAAGCATAGAGATTATCATGTGGACCTTGAATCCCGGCTGGGGAAAACTCA GGTTGTTACACCGATCGCACCTCTAAGCCAGCAGGCTGGATACTTCTGTTCGGTATGCGAGTGTGTAGTAAAGGATTCCGCAAACTACTTGGATCACATC AATGGAAAGAAACATCAGAGAGCTTTAGGCATGTCTATGCGGGTCGAAAGGTCATCCCTTCAACAGGTCCAAGAACGATTCGAGATGCTTAAGAAACGTA AAGATCCCACCAGTTTCTCAGAACAAGATCTCGATGAACGACTCTTGAAGCGGCAGCAGGAGGAGGAGGAACATAAGCGACTGAAACGAGAACGAAAGAA GGAAAAAAAGAAAGAGAAGGCTGGAGAAGATCAAGAAGCTGATATCGACCCAGATGTTGCGGCTATGATGGGTTTCGGTGGTTTTGGTTCGTCCAAGAAG TAG
AA sequence Show only first row Show all	>Lus10010928 pacid=23172515 polypeptide=Lus10010928 locus=Lus10010928.g ID=Lus10010928.BGIv1.0 annot-version=v1.0 MANPPGVDNTFRKKFDPEEYLERAREREKQEAEGRSKSKSKGPPVQRQPLKHRDYHVDLESRLGKTQVVTPIAPLSQQAGYFCSVCECVVKDSANYLDHI NGKKHQRALGMSMRVERSSLQQVQERFEMLKKRKDPTSFSEQDLDERLLKRQQEEEEHKRLKRERKKEKKKEKAGEDQEADIDPDVAAMMGFGGFGSSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05760	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10010928 [exp]	0	1
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10017135 [exp]	1.0	0.9274
AT1G76860			Small nuclear ribonucleoprotei...		Lus10026326 [exp]	3.0	0.8999
AT4G35980			unknown protein		Lus10028436 [exp]	3.5	0.9023
AT1G77750			Ribosomal protein S13/S18 fami...		Lus10035785 [exp]	3.9	0.8861
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Lus10022921 [exp]	4.0	0.8923
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10014329 [exp]	8.9	0.8802
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10039887 [exp]	11.3	0.8634
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10029059 [exp]	13.0	0.8269
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	13.4	0.8750
AT5G27430			Signal peptidase subunit (.1)		Lus10040138 [exp]	13.5	0.8491

Compare expression of checked genes

Lus10010928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.