Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56310 597 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G24340 78 / 7e-15 3'-5' exonuclease domain-containing protein (.1) AT4G13870 63 / 1e-10 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031403 [exp] 466 / 1e-161 AT1G56310 305 / 2e-100 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10031402 [exp] 417 / 2e-143 AT1G56310 210 / 1e-64 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10031404 [exp] 131 / 3e-36 AT1G56310 87 / 9e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022376 [exp] 83 / 2e-16 AT5G24340 544 / 0.0 3'-5' exonuclease domain-containing protein (.1) Lus10029478 [exp] 61 / 2e-10 AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039591 [exp] 60 / 6e-10 AT3G12410 86 / 1e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10013769 [exp] 52 / 5e-07 AT4G13870 105 / 4e-27 Werner syndrome-like exonuclease (.1.2) Lus10015114 [exp] 52 / 1e-06 AT2G32415 1089 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10039164 [exp] 50 / 1e-06 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020000 [exp] 736 / 0 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.015G009500 [exp] 78 / 9e-15 AT5G24340 679 / 0.0 3'-5' exonuclease domain-containing protein (.1) Potri.016G028700 [exp] 54 / 6e-08 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2) Potri.017G059200 [exp] 52 / 1e-06 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.006G031400 [exp] 50 / 1e-06 AT3G12410 101 / 2e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G229000 [exp] 48 / 2e-05 AT2G32415 1050 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Potri.013G062800 [exp] 47 / 6e-05 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10010930 pacid=23172464 polypeptide=Lus10010930 locus=Lus10010930.g ID=Lus10010930.BGIv1.0 annot-version=v1.0 ATGGCCGTTACTCTGTCTCTCTACATATATAACAATCTCGCGGTCGTTCGCGGAGGAGGAGAACCAAAGAAGCGAACGACGGCGGACGGAGCTCATCGCA GCTACGGCGAAGCAGCAGCAGCAGAAGAAGAAGGAAAAGAGTATTTATCTTCTCGGTTCACCGCCGTAACCGTCTCCACCACCGCTTCATTCACCGCGCG CACCGTTTGGTTGCCGAGAAAACGGAGGAAACCGCCGGAAAACGAAGGTTCATTGCTGATTCTTCTAGTTCTACTCATGGGGTTGGAAAAAGAGGTTCAA TCGTTATACAGTGATAGAGATGAAGGTCATTCATCATCGGCCATATCTGTGCATTCTTTCTCTGATTTAACCCACATTTCTCCCGTGGTGTTCTTGTATC TATTGAAAGAGTGTTATGTTCATGGTACAGTTAAGGCAACTAAAAAATTCAGAACTCTTCAACATCAAGTGCATCAGGTTCTATATAATTCTCCTCAGCC AGGTCCTCTTACATTTATTGGTCGATGCCTCTATGTATTGCCTGTATTTGGTGAATATTGTGACGGGTTTAGTCACTTGATCGTATCTGCTCTTCAACGG TATCGGAAAGTAGCAAAGTCTTCAGACGACATATCGACTGCAAAAGTATTAGGAGCTCGGTTATTCATCGACATTTTGGAAGGCGTGATTCCACTCCTTG ATGAAAGAATTGGGGTCAAAATACTTGGAGTTTTTCATGTCACTTCATCTGATATGGATGAGGCTATATCCCAGCTGAAGTATCAAAGACATTTTAAGTT TGACACTGGAAGAGCATTTGTTGAGCCTTATATATTTAAGTTGGTTGAGTCCCAGTCTTATATGACTGCAGTCAATTTGCTAGAACAGTTATCCATCCGA GAATCTGGTCGATCTTTTCTCGTCAAGATGATGGATAACCATGAATATAAAGCAGCCGAAAAATGGGCAACATTTATGGGCAAGCAAATGCTGTGTTCAC TAGTACAAGAATACGTTGATAGGAAGTTGTTGAAGCAAGCATATGACATTATTAAGAAAAACGACCTAAAGCAGGAGTTCCCAGTGGTATACCTTAAATG TAAAGAAAGCTCGCTGAAGAAATTTGCAGAGAAAGCACTGTGGGATATTGCAGAAGCTAAGACACATGGTGACAGACAACTCCTTGAGTATCTGGTTTAC TTGGCATTGGAGGCTGGTTACACAGAGAAAGTGGATGAACTATGTGATCGATACTCCCTTGAAGGTTTTAGAAAACTCACAGAACCGGAGATTAGTAGCA CTCAGCGCAGTAGATACCTGCATCTGAACGAGTTAATCACCAACAGCGTTGTTTGGGTTGACGATGCTAACGGTTTGTACGACGCCACGTCCTATATCGA AGGATGCAAGGTTGTGGGTGTTGATTGTGAATGGAAACCCAATTACCAGAAAGGCAGCAAACCGAACCGGGTTTCTATCATGCAAATATCTTCAGAGGAA ACAGCTTTTGTTCTCGACTTGATTAAGCTATCAGAAGATGTGCCTGATGCTCTAGACAGCTGCCTTACTCGCATTTTGCAGTCTCCTGGAGTTCTGAAAC TCGGTTATAACTTCAAGTGTGATATAAAGCAATTGGCAGGATCGTATACAGAGCTCAACTGTTTTAAGCAATACCAAATGTTGCTAGACATTCAGAACGT ATTCAAGGAACGATGTGGCGGCTTGTCAGGACTTGCAGAGAAAATTATGGGAGCAGGGCTAAACAAGACCAGGCGAAATAGCAACTGGGAGTCTCGACCA CTTAGCCAGAACCAGCTGGAGTATGCAGCTCTGGACGCGGCTGTACTGGTTCACATATTCCACAGAGCTCGTAACCCTAGTCAGACCACTTCGGCTGCAC AAGGCAACGAGAAATTCGAGTGGAAATCTCACATTGTTTTCATTTTGAATCCTCGCTCTGAGCAGCTCGCAAAAAATTCTTACGGAACTTGGCTTGATAT TAAACGAGCAGAAGCCAAGCTAACCCTGGCTCGGCTTGACAGGTTTGCGAGCTAG
AA sequence Show only first row Show all	>Lus10010930 pacid=23172464 polypeptide=Lus10010930 locus=Lus10010930.g ID=Lus10010930.BGIv1.0 annot-version=v1.0 MAVTLSLYIYNNLAVVRGGGEPKKRTTADGAHRSYGEAAAAEEEGKEYLSSRFTAVTVSTTASFTARTVWLPRKRRKPPENEGSLLILLVLLMGLEKEVQ SLYSDRDEGHSSSAISVHSFSDLTHISPVVFLYLLKECYVHGTVKATKKFRTLQHQVHQVLYNSPQPGPLTFIGRCLYVLPVFGEYCDGFSHLIVSALQR YRKVAKSSDDISTAKVLGARLFIDILEGVIPLLDERIGVKILGVFHVTSSDMDEAISQLKYQRHFKFDTGRAFVEPYIFKLVESQSYMTAVNLLEQLSIR ESGRSFLVKMMDNHEYKAAEKWATFMGKQMLCSLVQEYVDRKLLKQAYDIIKKNDLKQEFPVVYLKCKESSLKKFAEKALWDIAEAKTHGDRQLLEYLVY LALEAGYTEKVDELCDRYSLEGFRKLTEPEISSTQRSRYLHLNELITNSVVWVDDANGLYDATSYIEGCKVVGVDCEWKPNYQKGSKPNRVSIMQISSEE TAFVLDLIKLSEDVPDALDSCLTRILQSPGVLKLGYNFKCDIKQLAGSYTELNCFKQYQMLLDIQNVFKERCGGLSGLAEKIMGAGLNKTRRNSNWESRP LSQNQLEYAALDAAVLVHIFHRARNPSQTTSAAQGNEKFEWKSHIVFILNPRSEQLAKNSYGTWLDIKRAEAKLTLARLDRFAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56310			Polynucleotidyl transferase, r...		Lus10010930 [exp]	0	1
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10023648 [exp]	4.6	0.8446
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10034922 [exp]	5.5	0.8221
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10008242 [exp]	13.2	0.8678
AT3G51980			ARM repeat superfamily protein...		Lus10023269 [exp]	23.8	0.8595
AT5G12900			unknown protein		Lus10031820 [exp]	29.9	0.7771
AT2G04305			Magnesium transporter CorA-lik...		Lus10007098 [exp]	32.6	0.8378
AT5G63460			SAP domain-containing protein ...		Lus10016762 [exp]	40.9	0.8370
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Lus10024126 [exp]	49.0	0.8224
AT3G24060			Plant self-incompatibility pro...		Lus10023675 [exp]	54.2	0.7832
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	54.6	0.8050

Compare expression of checked genes

Lus10010930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.