Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09195 439 / 4e-149 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031400 [exp] 882 / 0 AT1G09195 444 / 5e-151 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020100 [exp] 516 / 2e-180 AT1G09195 570 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF02541 [flax] [poplar] Ppx-GppA Ppx/GppA phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10010931 pacid=23172454 polypeptide=Lus10010931 locus=Lus10010931.g ID=Lus10010931.BGIv1.0 annot-version=v1.0 ATGGCGCCATCATTCGATCTCTTCGCCGCAATCGACATGGGGACGAACTCCTTCAAGGTAGTGATAATCCAATTCAATCCTTCCACCGGCCATTTCATCG CCGTTGACCGAATCGCCGACCGCGTCGTCCTCGGCTGGGACTCTTCCTCATCATCTTCCACCGCGCTAATCTCCTCCTCCGCCTTCCCCCGAGCCGTACA GTGCCTCCGTGAGTTCTCCGATATACTCCGATCCCGCGGCATCTCACCCCGACGGACTCGCTGCGTCGCCACTTCGGCTGTGAGGGAGGCGGCCAACGGG GGCGAGCTCGTGGACGCCGTTCGTGCTGCCACGGGGATTGAAACGATTGTTATTTCTGGCGAAGAGGAGGCGAGGTTTGTTTACTACGGAGTGAGTCAGT TTCTGTCGGTGAGGGAGAGGAGAGTGCTGTTGGTGGATATCGGCGGGGGGTCGACTGAGTTCGTGATTGGCGAGAGAGGAGTTGTTGAATTTGGAGCGAG TTTGAAGCTAGGTCATGTGAGTTTGACTCAGCGATTCGGGGGTGATGTGGAAGGGATTAGGGGTTTCGTACGGGGAGTTATTGAAGGATCGGGGTTGGTG GAGGAGGTGAAGAGGTTTGGGTTTGAAGTAGCTGTTGGAAGTTCAGGAACTATTGGAGCTGTTGAGAAAGCAGTTCTCCATGGCTATGGCGACGCTGAAA CGAGTATGTCTGGAGATGAGCTTCTGCGGAGACAAGTGAAGAGGGACTGGAGATTCAGCAGAGGGGAACTGAAGAGTGTTGTTGAGAGGCTGAGTTGGGC AAATGGGGATGAAGAGATGAAGAAAAGAGAGGAGCTATTTAGGAAGAGATCAGAGTTCATTGTAGCTGGTGCTGTGTTATTAGAGGTTATATTTGAGATG CTTGGGATTGAAGAGATGGAAGTTTCTGAGTATGGATTAGGTGAAGGAGTTGTTGCAGAAGCTCTGAAGAAGGAATCTGAAGGTTTTGTGTTGAGTGATA ATCCGCGATGGAATTCGGTTGCGAGATGTGCCACGAGGTTTAGTGACAAGAAGAGGATTAAGGTTGGTTCTAGATGTGCCGCCATTTCCAAGGGGATATT TGATGGCTTAAGGCAATGTGGTAAGTTAAAGGTTCCATTAATCGACGGGGACCTTGAATGCCTTCAGGCAGCTTGTTTGCTTCACGGCGTGGGCCTTTTC GGTGGCAAAAAGGGTTATCACAAGCTGTCTTATCATGTTATCATGGATGGTGGCCATCTCCATGGTTTCAGCACTGAAGAGATCAAGTTGATAGCACTTC TTGCAAAACATCACAGAAGGAAGTTTCCGAAACCTGGCGATGATTCATTGATCAATAGTACAGAAGAGTTCAGGCTGAGAGTTCAAGCTCTTTCAACTAT CATAAGGATATCCTTCATACTACAGACGAATGAAAGCTTCAGTTTCCAAGATATCGAACTCTTACCTTCCGGTGAAGGATTTAGACTGGTATAA
AA sequence Show only first row Show all	>Lus10010931 pacid=23172454 polypeptide=Lus10010931 locus=Lus10010931.g ID=Lus10010931.BGIv1.0 annot-version=v1.0 MAPSFDLFAAIDMGTNSFKVVIIQFNPSTGHFIAVDRIADRVVLGWDSSSSSSTALISSSAFPRAVQCLREFSDILRSRGISPRRTRCVATSAVREAANG GELVDAVRAATGIETIVISGEEEARFVYYGVSQFLSVRERRVLLVDIGGGSTEFVIGERGVVEFGASLKLGHVSLTQRFGGDVEGIRGFVRGVIEGSGLV EEVKRFGFEVAVGSSGTIGAVEKAVLHGYGDAETSMSGDELLRRQVKRDWRFSRGELKSVVERLSWANGDEEMKKREELFRKRSEFIVAGAVLLEVIFEM LGIEEMEVSEYGLGEGVVAEALKKESEGFVLSDNPRWNSVARCATRFSDKKRIKVGSRCAAISKGIFDGLRQCGKLKVPLIDGDLECLQAACLLHGVGLF GGKKGYHKLSYHVIMDGGHLHGFSTEEIKLIALLAKHHRRKFPKPGDDSLINSTEEFRLRVQALSTIIRISFILQTNESFSFQDIELLPSGEGFRLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09195			unknown protein		Lus10010931 [exp]	0	1
AT2G19710			Regulator of Vps4 activity in ...		Lus10040542 [exp]	1.4	0.7485
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10026408 [exp]	6.0	0.6892
AT4G12720		ATNUDX7, GFG1, ...	GROWTH FACTOR GENE 1, Arabidop...		Lus10006365 [exp]	19.7	0.7205
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10018839 [exp]	19.9	0.7271
					Lus10022175 [exp]	21.3	0.6978
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10040659 [exp]	21.5	0.6912
AT5G04550			Protein of unknown function (D...		Lus10008987 [exp]	27.6	0.7128
AT3G10300			Calcium-binding EF-hand family...		Lus10031049 [exp]	27.6	0.7187
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10016797 [exp]	30.2	0.6982
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10018810 [exp]	31.6	0.7151

Compare expression of checked genes

Lus10010931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.