Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34250 910 / 0 SecY protein transport family protein (.1.2) AT1G29310 910 / 0 SecY protein transport family protein (.1) AT1G78720 897 / 0 SecY protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031399 [exp] 964 / 0 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2) Lus10007313 [exp] 955 / 0 AT2G34250 909 / 0.0 SecY protein transport family protein (.1.2) Lus10029262 [exp] 955 / 0 AT2G34250 908 / 0.0 SecY protein transport family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G107900 [exp] 946 / 0 AT2G34250 909 / 0.0 SecY protein transport family protein (.1.2) Potri.001G387600 [exp] 946 / 0 AT2G34250 908 / 0.0 SecY protein transport family protein (.1.2) Potri.011G114900 [exp] 674 / 0 AT1G78720 672 / 0.0 SecY protein transport family protein (.1) Potri.011G114200 [exp] 479 / 7e-169 AT1G78720 474 / 3e-167 SecY protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10559 [flax] [poplar] Plug_translocon Plug domain of Sec61p PF00344 [flax] [poplar] SecY SecY translocase
Representative CDS sequence Show only first row Show all	>Lus10010932 pacid=23172455 polypeptide=Lus10010932 locus=Lus10010932.g ID=Lus10010932.BGIv1.0 annot-version=v1.0 ATGGGAGGAGGATTCAGGGTGCTGCATTTGGTGAGGCCGTTCCTTTCGTTTCTGCCCGAAGTTCAGAGCGCTGACAGGAAGATCCCATTCAGGGAGAAGG TCATCTACACTGTCATCTCGCTCTTCATCTTCCTGGTGTGCAGTCAGCTTCCGCTTTATGGAATTCACTCGACTACTGGTGCCGATCCCTTCTACTGGAT GCGTGTCATTCTCGCTTCCAACAGAGGGACCGTGATGGAGCTTGGGATTACGCCCATTGTCACTTCTGGACTGGTGATGCAGCTCTTGGCTGGATCCAAG ATCATTGAAGTTGACAACAATGTCCGTGAGGATCGAGCTTTGCTGAATGGCGCACAAAAGCTGTTGGGTATCCTGATTGCTGTTGGTGAAGCTGTTGCAT ATGTGCTCTCTGGGATGTACGGAAGTGTCGGTCAGCTGGGTGTTGGGAATGCTATTCTCATCATTCTCCAGCTGTGCTTTGCTGGAATCATTGTCATCTG TTTGGATGAACTGCTCCAGAAAGGATACGGTCTTGGTTCCGGGATTTCCCTTTTCATTGCAACCAACATCTGTGAGAGTATTATCTGGAAAGCATTTAGT CCCACTACGATCAACAGTGGTCGGGGTGCTGAGTTCGAGGGTGCTGTTATCGCCTTGTTCCACCTCCTGATAACAAGGACAGACAAAGTCCGTGCTCTTA GAGAAGCGTTCTATCGGCAGAACCTTCCAAATGTTACGAATTTGCTTGCTACTGTCTTGGTCTTCCTTATTGTTATCTATTTCCAAGGTTTCCGTGTAGT CTTACCCGTGAGGTCAAAGAATGCTCGCGGACAGCAGGGTTCGTACCCGATCAAGCTTTTCTACACCTCCAACATGCCAATCATTCTCCAATCTGCTCTT GTTTCCAACCTTTACTTCATCTCTCAGTTGCTGTACAGGAAGTACAGTGGAAACTTTTTGGTCAACTTGTTGGGAAAGTGGAAGGAGTCTGAGTATTCCG GTGGTCAGTTCATTCCCGTCGGTGGGCTTGCATACTATGTCACTGCACCAGCTAGCTTGGCAGACATGGCTGCCAACCCATTCCATGCATTGTTCTACCT GATATTTATGCTCGGAGCTTGCGCCCTTTTTTCGAAAACCTGGATTGAAGTATCTGGCTCCTCTGCTCGAGATGTCGCCAAGCAACTGAAGGAGCAACAA ATGGTGATGCCAGGACACCGAGACGGGAACCTGCAGAAGGAGCTGAACCGATACATCCCAACAGCAGCCGCCTTTGGAGGAATGTGCATCGGTGCATTGA CCGTCCTGGCTGACTTCATGGGCGCAATCGGTTCGGGAACTGGAATCCTGCTTGCTGTGACCATCATTTACCAGTACTTCGAGACCTTCGAGAAGGAGAA GGCCAGTGAGCTAGGGTTCTTTGGCTTCTGA
AA sequence Show only first row Show all	>Lus10010932 pacid=23172455 polypeptide=Lus10010932 locus=Lus10010932.g ID=Lus10010932.BGIv1.0 annot-version=v1.0 MGGGFRVLHLVRPFLSFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSK IIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFS PTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL VSNLYFISQLLYRKYSGNFLVNLLGKWKESEYSGGQFIPVGGLAYYVTAPASLADMAANPFHALFYLIFMLGACALFSKTWIEVSGSSARDVAKQLKEQQ MVMPGHRDGNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34250			SecY protein transport family ...		Lus10010932 [exp]	0	1
AT2G34590			Transketolase family protein (...		Lus10023304 [exp]	1.7	0.9341
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10029985 [exp]	5.7	0.9079
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10015223 [exp]	6.8	0.8902
AT1G09640			Translation elongation factor ...		Lus10007148 [exp]	12.8	0.9227
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10005046 [exp]	14.3	0.9190
AT1G48830			Ribosomal protein S7e family p...		Lus10034909 [exp]	16.4	0.9170
AT1G48830			Ribosomal protein S7e family p...		Lus10023638 [exp]	18.8	0.9158
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10008632 [exp]	21.0	0.9076
AT5G12110			Glutathione S-transferase, C-t...		Lus10036101 [exp]	27.1	0.9036
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10012839 [exp]	28.4	0.8992

Compare expression of checked genes

Lus10010932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.