Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06720 890 / 0 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT4G16143 877 / 0 IMPA-2 importin alpha isoform 2 (.1.2) AT1G02690 780 / 0 IMPA-6 importin alpha isoform 6 (.1.2) AT1G09270 773 / 0 IMPA-4 importin alpha isoform 4 (.1.2.3) AT4G02150 763 / 0 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT5G49310 633 / 0 IMPA-5 importin alpha isoform 5 (.1) AT3G05720 593 / 0 IMPA-7 importin alpha isoform 7 (.1) AT5G52000 408 / 9e-139 IMPA-8 importin alpha isoform 8 (.1) AT1G32880 179 / 2e-53 ARM repeat superfamily protein (.1) AT5G03070 167 / 2e-45 IMPA-9 importin alpha isoform 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031398 [exp] 1046 / 0 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10037722 [exp] 906 / 0 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10016850 [exp] 879 / 0 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10010028 [exp] 868 / 0 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2) Lus10036330 [exp] 860 / 0 AT3G06720 874 / 0.0 importin alpha isoform 1 (.1.2) Lus10036452 [exp] 823 / 0 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2) Lus10041124 [exp] 723 / 0 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2) Lus10001480 [exp] 189 / 2e-53 AT5G03070 729 / 0.0 importin alpha isoform 9 (.1) Lus10008480 [exp] 183 / 2e-51 AT5G03070 738 / 0.0 importin alpha isoform 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010900 [exp] 981 / 0 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.005G020400 [exp] 977 / 0 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.010G001400 [exp] 910 / 0 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.008G214100 [exp] 909 / 0 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.014G124200 [exp] 867 / 0 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2) Potri.002G199600 [exp] 848 / 0 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G007300 [exp] 809 / 0 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.016G086600 [exp] 175 / 3e-48 AT5G03070 801 / 0.0 importin alpha isoform 9 (.1) Potri.005G210000 [exp] 59 / 7e-09 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 56 / 5e-08 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0020 [flax] [poplar] TPR PF01749 [flax] [poplar] IBB Importin beta binding domain
Representative CDS sequence Show only first row Show all	>Lus10010933 pacid=23172460 polypeptide=Lus10010933 locus=Lus10010933.g ID=Lus10010933.BGIv1.0 annot-version=v1.0 ATGTCGTTGAGGCCCAATGCTCGGACCGATGTCCGCCGGAACAGGTACAAGGTCGCCGTCGATGCAGAGGAAGGGCGACGGAGGAGGGAGGATAATATGG TGGAGATCCGGAAGAACAAGAGGGAGGAGAGCCTCCAGAAGAAGCGTCGCGAGGGGCTCCAGGCCCAGACCATGCCTGCTTCGGTTCACTCATCAGCTGT GGAGAAGAGGTTGGAGCATCTGCCATCTATGGTCGCTGGTGTTTGGTCTGAGGATGGTAGTCTGCAGCTTGAGTCTACTACTCAATTTAGAAAGTTGCTT TCGATTGAACGGAGCCCTCCAATTGAGGAAGTTATACAAGCTGGTGTTGTTCCTCGCTTCGTTGAGTTCCTTATGAGGGAGGACTTTCCCCAGCTTCAGT TTGAGGCTGCTTGGGCTCTTACAAATATCGCTTCTGGGACGTCTGAGAATACAAAAGTTGTTATTGACCATAATGCTGTGCCAATATTTGTGAAGCTTCT GGGTTCACAGAGTGATGATGTTCGGGAGCAGGCTGTGTGGGCATTGGGAAATGTTGCTGGTGACTCTCCCAGGTGCCGTGATCTTGTACTTGGTAATGGA GCTTTGCTTCCTTTGCTAGCTCAGCTCAATGAACATGCAAAATTATCAATGCTTAGAAATGCTACATGGACGTTGTCAAATTTCTGTCGTGGGAAGCCAC AACCTCCGTTTGACCAGGTTAAGCCAGCTCTTCCAGCCCTTGCACAACTTATCCATTCTAACGATGAAGAGGTCTTGACCGATGCTTGCTGGGCACTCTC ATATTTATCTGATGGGACCAATGATAAAATTCAAGCTGTCATCGAAGCTGGCGTGTGTCCTCGTTTGGTTGAACTATTGCTGCATCAATCCCCATCTGTT CTTATTCCTGCACTTCGTACTGTTGGAAATATTGTCACTGGTGACGATATGCAAACTCAGTGTATCATCAATCACCAAGCGTTGCCATGTCTTCTTAACT TGTTGACAAACAACTACAAGAAGAGCATCAAGAAAGAAGCTTGTTGGACTATTTCAAATATAACTGCTGGTAATAAGGAGCAGATTCAGTGTGTAATTGA GGCTAACATCATTGGCCCATTAGTCCATCTGTTGCAAAATGCAGAATTCGATATCAAGAAGGAAGCTGCATGGGCTATTTCCAATGCAACCTCTGGTGGT ACCCATGACCAAATCAAGTACCTAGTTAGTCAAGGATGCATCAAGCCATTGTGCGACCTTCTAATCTGCCCCGATCCTAGGATCGTCACGGTATGTCTGG AGGGACTCGAGAACGTCTTGAAGGTCGGGGAAGCGGACAAGAACGTAGGCAACACTGGTGGTGTTAATCTGTATGCTCAGCTGATCGACGATGCTGAAGG TTTGGAGAAAATCGAAAACTTACAATCTCACGACAACACCGAGATCTACGAGAAGGCTGTCAGAATTCTCGAGACGTACTGGTTGGAGGAGGACGAGACG ATGCCACCTGGCGAGGCTGCTGCCCAGACCGGTTTCCAGTTCGGAGGCAGCGAGGCTCCTGTTGTTCCTTCAGGCGGATTCAACTTCACCTAG
AA sequence Show only first row Show all	>Lus10010933 pacid=23172460 polypeptide=Lus10010933 locus=Lus10010933.g ID=Lus10010933.BGIv1.0 annot-version=v1.0 MSLRPNARTDVRRNRYKVAVDAEEGRRRREDNMVEIRKNKREESLQKKRREGLQAQTMPASVHSSAVEKRLEHLPSMVAGVWSEDGSLQLESTTQFRKLL SIERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHNAVPIFVKLLGSQSDDVREQAVWALGNVAGDSPRCRDLVLGNG ALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAQLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHQSPSV LIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKEQIQCVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGG THDQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENVLKVGEADKNVGNTGGVNLYAQLIDDAEGLEKIENLQSHDNTEIYEKAVRILETYWLEEDET MPPGEAAAQTGFQFGGSEAPVVPSGGFNFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	0	1
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	3.0	0.8938
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	4.0	0.8748
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10015624 [exp]	5.3	0.8575
AT3G01930			Major facilitator superfamily ...		Lus10035203 [exp]	6.7	0.8424
AT2G45010			PLAC8 family protein (.1.2)		Lus10038926 [exp]	7.7	0.8660
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	8.7	0.8631
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	8.9	0.8571
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009042 [exp]	10.4	0.8505
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10014185 [exp]	11.6	0.8283
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10037049 [exp]	11.6	0.8130

Compare expression of checked genes

Lus10010933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.