Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06520 576 / 0 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT4G01950 423 / 4e-143 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT1G02390 414 / 3e-139 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT2G38110 412 / 6e-139 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT1G01610 411 / 1e-138 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT3G11430 404 / 1e-135 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT4G00400 402 / 4e-135 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT5G06090 395 / 2e-132 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT3G11325 227 / 8e-69 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031396 [exp] 942 / 0 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10020767 [exp] 684 / 0 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010741 [exp] 450 / 2e-153 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 449 / 5e-153 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 405 / 2e-136 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10001449 [exp] 398 / 4e-133 AT4G01950 517 / 2e-180 glycerol-3-phosphate acyltransferase 3 (.1) Lus10002421 [exp] 394 / 2e-131 AT4G01950 514 / 2e-179 glycerol-3-phosphate acyltransferase 3 (.1) Lus10004711 [exp] 384 / 4e-128 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10029839 [exp] 381 / 3e-127 AT4G01950 449 / 9e-155 glycerol-3-phosphate acyltransferase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202200 [exp] 674 / 0 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.016G063900 [exp] 452 / 1e-154 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.002G192600 [exp] 448 / 3e-152 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1) Potri.006G198100 [exp] 443 / 5e-151 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 439 / 2e-149 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 424 / 2e-143 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.010G201200 [exp] 413 / 2e-139 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.014G085500 [exp] 407 / 8e-137 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.008G058200 [exp] 399 / 7e-134 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10010934 pacid=23172490 polypeptide=Lus10010934 locus=Lus10010934.g ID=Lus10010934.BGIv1.0 annot-version=v1.0 ATGGTGTTCCACATAGTGCTCCTCAAGCTAGTAGAATGGGTCATCTACCAACTCCTAGCCAATTCCTGCTACAAAGCTGCCAAAAAGGTCAGCAGCTACT TCTTCTCCAGACCAAACCCATCTCCAAAGTCCAATCTTTTCTCCCATTCCTCATCATCTCCAAAGTCCAATCCTTCACCATATCCTAGCGTCACAAAGTT CGTCCGACAAGGCGAAAAGATCGAATCTTTAGTCGTATTCGACATCCAGGGGACTCTGCTCCGGAACGATTCCTTCTTCCCTTACTTCATGCTGGTGGCC TTCGAAGGAGGCAGCATTTTCAGAGCCCTCACACTTCTGATAACTTATCCCTTCACTTTCCTGTTCATGGATGCTGATCTCCAGCTGAAAGCCATGATCT TTGTGACGTTCTACGGGTTGCGAGTTAAAGACATGGAGAATGTTTCCAGGGCTGTTCTGCCCAAGTTCTTCATGGAGAATCTTGACTACCAGGTGTACAA GATTCTTCAGGATTCTGGAGAATCTGTAACTGTGGTGACAAGTGTTCCTAGGGTTATGGTGGAGGGTTTTCTGAAGGAGTATTTGGGTGTTGGGAATGTT CTTGCGACTGAGTTGGGACAGAAAGGTGGATGCTTTACTGGGTTTGTTTCTGGAGATGGGATTGGTTTGAAGCATAAAGCTGTTGTGGATTTGTTTGGTG ACAAGAAACCTGATGTTGGAATTGGATCTTCTCGTTGCTGTTATTCCTCATCTCATCAGGATTCTCTGTTCCTTTCTCTTTGCAAGGAAGGGTATGTTGT AAACAAGGAAGACAGCAAGAGCTCAGCATCAGAAACACCAAGAGACAAATACCCAAAACCATTAGTCTTCCACGACGGCCGTCTAGCATTCCTCCCGACG CCGGCAGCCACGTCAGCAATGTTCCTCTGGCTCCCATTCGGAATCCTTCTCGCCGTGTTCCGCCTCCTCATCGGAACCCTCCTCCCTTACCGACTCGCAC TCTTCCTCGGCGCTGTCAGCGGAATCGACATCCGATTCCACGACACTCGAATTAAAAAAAACCCCGAACACCCCGACAAAAACGGCGGTGTTTTATACGT CTGCACCCACCGGACTTTGCTCGACCCGGTTTTCCTATCCACCTGCCTCCGGAAACCCCTCACGGCCGTGACATACAGCCTCAGCAAGATGTCGGAGCTG ATCGCCCCGATCAAAACCGTCCGCCTGACCCGAGAGCGCCGCACCGACGGCGAAACAATGCAGAGGATGCTCCGAGAAGGGGATCTCGTCGTCTGCCCCG AAGGAACCACCTGCCGCGAACCTTACCTCCTCCGATTCAGCTCCCTGTTCGCCGAGCTCAGCGACGAGATCGTTCCGGTGGCCGTCGACACATCGGTCGG AATGTTCTACGGGACGACGGCGAGCGGGATGAAGTGTCTGGATCCGATTTTTTTCCTGATGAATCCGAGGCCCAGGTACTGGATCCGGGTGCTGGAAAAG CTGCCGGCGGAGATGAGCTGCGGCGGCGGAGGGAAATCGAGCTCCGAAGTGGCGAATTACATACAGAGGCAGCTGGCGGCGACGCTTGGGTTTGAGTGTA CTTCGCTGACGAGGAGGGATAAGTATTTGATGCTCGCCGGTAACGAAGGGATCGTCGCCGATCATTGGAATTCGAAGCCAGCGTTGGTTTCTTGA
AA sequence Show only first row Show all	>Lus10010934 pacid=23172490 polypeptide=Lus10010934 locus=Lus10010934.g ID=Lus10010934.BGIv1.0 annot-version=v1.0 MVFHIVLLKLVEWVIYQLLANSCYKAAKKVSSYFFSRPNPSPKSNLFSHSSSSPKSNPSPYPSVTKFVRQGEKIESLVVFDIQGTLLRNDSFFPYFMLVA FEGGSIFRALTLLITYPFTFLFMDADLQLKAMIFVTFYGLRVKDMENVSRAVLPKFFMENLDYQVYKILQDSGESVTVVTSVPRVMVEGFLKEYLGVGNV LATELGQKGGCFTGFVSGDGIGLKHKAVVDLFGDKKPDVGIGSSRCCYSSSHQDSLFLSLCKEGYVVNKEDSKSSASETPRDKYPKPLVFHDGRLAFLPT PAATSAMFLWLPFGILLAVFRLLIGTLLPYRLALFLGAVSGIDIRFHDTRIKKNPEHPDKNGGVLYVCTHRTLLDPVFLSTCLRKPLTAVTYSLSKMSEL IAPIKTVRLTRERRTDGETMQRMLREGDLVVCPEGTTCREPYLLRFSSLFAELSDEIVPVAVDTSVGMFYGTTASGMKCLDPIFFLMNPRPRYWIRVLEK LPAEMSCGGGGKSSSEVANYIQRQLAATLGFECTSLTRRDKYLMLAGNEGIVADHWNSKPALVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10010934 [exp]	0	1
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10031396 [exp]	1.0	0.8754
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10037062 [exp]	2.0	0.7110
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	10.2	0.7132
AT4G18820			AAA-type ATPase family protein...		Lus10007316 [exp]	10.7	0.7585
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Lus10010900 [exp]	14.4	0.6426
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10000306 [exp]	22.2	0.6497
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	29.5	0.6652
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10001814 [exp]	34.9	0.6219
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027543 [exp]	37.1	0.6513
AT1G78930			Mitochondrial transcription te...		Lus10037301 [exp]	43.7	0.6078

Compare expression of checked genes

Lus10010934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.