Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42910 571 / 0 Phosphoribosyltransferase family protein (.1) AT1G10700 486 / 1e-172 PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) AT2G35390 77 / 1e-15 Phosphoribosyltransferase family protein (.1.2.3) AT2G44530 74 / 2e-14 Phosphoribosyltransferase family protein (.1.2) AT1G32380 73 / 3e-14 PRS2 phosphoribosyl pyrophosphate (PRPP) synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031395 [exp] 659 / 0 AT2G42910 578 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10020768 [exp] 610 / 0 AT2G42910 582 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10007345 [exp] 605 / 0 AT2G42910 579 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10006202 [exp] 476 / 8e-169 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10036849 [exp] 474 / 3e-168 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10012074 [exp] 80 / 2e-16 AT2G44530 605 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10040098 [exp] 74 / 2e-14 AT2G35390 639 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10030948 [exp] 64 / 3e-11 AT2G35390 613 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10027908 [exp] 63 / 1e-10 AT2G44530 555 / 0.0 Phosphoribosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059700 [exp] 565 / 0 AT2G42910 575 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.005G202100 [exp] 558 / 0 AT2G42910 565 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.010G045000 [exp] 495 / 3e-176 AT1G10700 566 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Potri.001G145700 [exp] 83 / 2e-17 AT2G35390 657 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.014G179600 [exp] 80 / 1e-16 AT2G44530 628 / 0.0 Phosphoribosyltransferase family protein (.1.2) Potri.003G088400 [exp] 79 / 3e-16 AT2G35390 655 / 0.0 Phosphoribosyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10010935 pacid=23172488 polypeptide=Lus10010935 locus=Lus10010935.g ID=Lus10010935.BGIv1.0 annot-version=v1.0 ATGGATTCCAGCAGCACAAAATCAATCGGAAGTGTTCTGCAGACGCAGCAGCAGCGGCGGCAACACAACAAACAAGTACTTCTATTCTACTGCCTAGAGT GTGAAGAGCTCGCCCGTAAGATCGCCGCCACTTCCGACCTCGTCACTCTACAGTCCATCAATTGGAGGAGTTTCCAGGATGGATTCCCCAACCTATATAT AAATAATGCACATGACATAAGGGGTCAACATGTAGCATTCCTTGCTTCATTCAGTTCCCCATCGGTGATCTTTGAGCAGCTTTCGGTAATCTATGCACTT CCGCGTCTGTTTGTTGCTTCATTCTCGTTGGTGTTGCCTTTCTTCCCAACCGCCACCTTCGAGCGGATGGATGAAGAAGGTGACGTTGCAACAGCGTTCA CCCTGGCCAGGATACTGTCTAATATTCCCATTTCGAGAGGCGGCCCGACTAGCTTAGTTGTCTACGATATACATGCTCTACAGGAGAGATTTTACTTTGG GGACCATGTTTTGCCTTTGTTTGAGACTGGGATTCCTCTGTTAAAGCAACGGCTTAATCAGCTTCCTGGATCTGACAAGATTGTGATTGCATTTCCCGAC GATGGAGCATGGAAGCGGTTCCACAACTTGTTGGATGACTACCCAACTGTGGTCTGCAACAAAGTTCGCGAAGGTGACAAGAGGATAGTAAGGATTAAGG AAGGCAACCCTGCCGGCTGTCATGTGGTCATAGTTGATGATCTGGTGCAGTCCGGTGGTACCCTTATTGAATGCCAGAAAGTGCTGGCAGCTCATGGTGC AGCGAAAGTAAGTGCTTATGTTACTCATGGTGTGTTTCCTAAGAAATCCTGGGAGCGATTCACTCATAAAAACGATGGTCTGGAGAAAGCATTTGACTAC TTCTGGATCACCGATTCATGCCCTGGAACCGTCAATGCCGTAGCAGACAAAGCTCCGTTCGAAGTTCTGAGTCTCGCTGGATCCATCGCTTCCGCACTCC AAATCTAA
AA sequence Show only first row Show all	>Lus10010935 pacid=23172488 polypeptide=Lus10010935 locus=Lus10010935.g ID=Lus10010935.BGIv1.0 annot-version=v1.0 MDSSSTKSIGSVLQTQQQRRQHNKQVLLFYCLECEELARKIAATSDLVTLQSINWRSFQDGFPNLYINNAHDIRGQHVAFLASFSSPSVIFEQLSVIYAL PRLFVASFSLVLPFFPTATFERMDEEGDVATAFTLARILSNIPISRGGPTSLVVYDIHALQERFYFGDHVLPLFETGIPLLKQRLNQLPGSDKIVIAFPD DGAWKRFHNLLDDYPTVVCNKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPKKSWERFTHKNDGLEKAFDY FWITDSCPGTVNAVADKAPFEVLSLAGSIASALQI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42910			Phosphoribosyltransferase fami...		Lus10010935 [exp]	0	1
AT5G52980			unknown protein		Lus10005024 [exp]	2.4	0.8751
AT4G40042			Microsomal signal peptidase 12...		Lus10015793 [exp]	2.6	0.9030
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10034144 [exp]	5.7	0.9000
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Lus10034595 [exp]	6.2	0.8835
AT2G45010			PLAC8 family protein (.1.2)		Lus10027214 [exp]	8.1	0.8675
AT5G14540			Protein of unknown function (D...		Lus10032138 [exp]	9.2	0.8775
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10013376 [exp]	14.0	0.8610
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10027484 [exp]	14.3	0.8652
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	14.7	0.8734
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	16.3	0.8750

Compare expression of checked genes

Lus10010935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.