Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23730 370 / 1e-129 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 362 / 9e-127 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57560 361 / 2e-126 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G25810 348 / 3e-121 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT4G30270 347 / 5e-121 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57550 345 / 6e-120 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT5G57530 325 / 4e-112 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT5G57540 324 / 7e-112 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT4G25820 318 / 1e-109 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1) AT5G48070 317 / 5e-109 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031393 [exp] 511 / 0 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10034098 [exp] 510 / 0 AT3G23730 376 / 5e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10003048 [exp] 509 / 0 AT3G23730 380 / 7e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 509 / 0 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 508 / 0 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10031392 [exp] 507 / 0 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 436 / 5e-156 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 434 / 4e-155 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 434 / 7e-155 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G201250 [exp] 424 / 4e-151 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 421 / 4e-150 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 421 / 8e-150 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 403 / 8e-143 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G236200 [exp] 385 / 7e-136 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.014G146100 [exp] 385 / 7e-136 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.011G077320 [exp] 379 / 2e-133 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.018G095100 [exp] 357 / 7e-125 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 354 / 1e-123 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G005700 [exp] 354 / 7e-123 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10010936 pacid=23172457 polypeptide=Lus10010936 locus=Lus10010936.g ID=Lus10010936.BGIv1.0 annot-version=v1.0 ATGGCGGCAACTCTGCCTATGGTGATGTTAGTGATGATGTTGGGTCATCTAATGGCAGTCTCAAACGCCAACTTCAACCAGCATTTTGATGTCACTTGGG GGCATCACCATGCTCAGATCATGAACGGCGGCCAGCAATTGACCCTCTCGCTCGACAAGGATTCCGGTGCTGGTTTCAAGTCCAAGAATGAGTATCTCTT TGGCCGTGTCGATATGCAGCTCAAACTCATCGCCGGCAACTCTGCTGGAAGTGTCACTACATTCTACCTATCGTCAGCAGAAGGACCGAATCACGACGAG ATCGACTTCGAGTTTCTCGGTAACTCCAGTGGGAGTCCTTACACCGTACACACCAATGTGTTTAGCCAAGGAAAAGGCAACCGAGAACAGCAGTTCCATC TCTGGTTCGACCCTACCGCAGCTTTCCACACCTACACCATCCTCTGGAATTCTCAAAGAATCATATTCTTGGTGGACAACATTCCGATCAGAGTGTTCAA CAACCTGGAATCAATGGGAGTTCCATTCCCCAACAAGAAGCCAATGAGCATCCACTCGAGCTTATGGAACGCTGATGACTGGGCCACGCAGGGCGGCCGA GTGAAGGCCGACTGGACCAAGGCTCCTTTCGTCGCATCTTACCGGAACTTCAAGGCCGAAGCCTGCGTCTGGTCACCATCCTCGTCCTCCTCGACTTGCT CTCCCGGAGCATGGCAGACTCAGGGGATCGATGCCGCCGGCCGTAACAGAATCCGATGGGTACAGAGTAAATATATGATCTACAATTACTGCACAGACTT GAAACGATTCCCTCAAGGCGTTCCAGTTGAATGCAAACAGTCCAGATTCCTTTGA
AA sequence Show only first row Show all	>Lus10010936 pacid=23172457 polypeptide=Lus10010936 locus=Lus10010936.g ID=Lus10010936.BGIv1.0 annot-version=v1.0 MAATLPMVMLVMMLGHLMAVSNANFNQHFDVTWGHHHAQIMNGGQQLTLSLDKDSGAGFKSKNEYLFGRVDMQLKLIAGNSAGSVTTFYLSSAEGPNHDE IDFEFLGNSSGSPYTVHTNVFSQGKGNREQQFHLWFDPTAAFHTYTILWNSQRIIFLVDNIPIRVFNNLESMGVPFPNKKPMSIHSSLWNADDWATQGGR VKADWTKAPFVASYRNFKAEACVWSPSSSSSTCSPGAWQTQGIDAAGRNRIRWVQSKYMIYNYCTDLKRFPQGVPVECKQSRFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010936 [exp]	0	1
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10021365 [exp]	1.4	0.9644
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Lus10017499 [exp]	4.9	0.9510
AT4G33070			Thiamine pyrophosphate depende...		Lus10015291 [exp]	6.9	0.9611
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	7.5	0.9633
AT3G05550			Hypoxia-responsive family prot...		Lus10033002 [exp]	12.0	0.9483
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	12.3	0.9564
AT5G25940			early nodulin-related (.1)		Lus10030052 [exp]	13.9	0.9537
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10021241 [exp]	14.1	0.9503
AT5G11420			Protein of unknown function, D...		Lus10005474 [exp]	15.0	0.9414
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10018926 [exp]	15.5	0.9505

Compare expression of checked genes

Lus10010936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.