Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58840 105 / 4e-26 PMD1 peroxisomal and mitochondrial division factor 1, Tropomyosin-related (.1.2) AT1G06530 93 / 2e-21 PMD2 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031394 [exp] 430 / 9e-153 AT1G06530 130 / 1e-35 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Lus10007347 [exp] 223 / 3e-71 AT3G58840 148 / 3e-42 peroxisomal and mitochondrial division factor 1, Tropomyosin-related (.1.2) Lus10020770 [exp] 206 / 8e-65 AT1G06530 147 / 6e-42 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Lus10013266 [exp] 61 / 3e-11 ND / Lus10030789 [exp] 60 / 5e-11 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G201400 [exp] 171 / 3e-51 AT1G06530 144 / 8e-41 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Potri.002G060200 [exp] 166 / 2e-49 AT1G06530 91 / 5e-21 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010937 pacid=23172444 polypeptide=Lus10010937 locus=Lus10010937.g ID=Lus10010937.BGIv1.0 annot-version=v1.0 ATGGCTGATGAGAAGGTGAACACTGATACTAACGGTATTACGACTCCGACGGAGGAGGAGAATCACGAGTCAGTGACAATCGATAGTTCCGACGGTATTG GCGATGACAGCAACGAAGAAGTGAAGCTGAAGAACAAGATTGAATCGCTGGAGAGTAGGAACGGGTCTCTAATCGAGGAGAATGAAGAATTCAAGAACCA GATTGAGAAGCTGAGGCAGGAGATCGAGTCACTGAAAACCGAATCGATGGAGGAGAGGCTTGAGGAACTGGAGAAAGAGCTAGAGCAGTCGGAGGCGAGC AGGAAGACTCTCGAATCCATAGCGGAAAGAGCCGAGCAGCTAGAATCGGAGGTTTCGAAACTGCAGCGCGATCTGATCGCATCCATGAGCCAGGGCGATG AATACAACGCCGAGATCGTCGAGTTGAAGAAGGAGATAGCGGTTATGGAAGCTAAAGTCCAGGAGGCGTGGAAAGAGAAGGAAGAGAACGATAAGAGAGT AAGGGAGCTGGAGAGGAAGGTCGGAGTTCTGCAGATGAAGGAGATCGAGGAGAAGAGTAAGAAGATCAGAATGGAGGAAGAGACTAGAGACCAAATCGCT GAGAAAGAAGCTCAGATGGAGAAGTACAGGAAGAGGATTGAGGAGTTGCAGAAGGAGCTGGCTGAGAAGCCTGATCTTACGGAGGAACTTAAGGTCTCGG AGAACAGAACGAAGGAGATGGAATCTAAGATGGCCGAGTTGCAGAAACAAGCTGAGGAGGCTGAGAAAGCTATCATCACTCTGAAACAGAGAGCTTACGA GAGTATCAATGGATTCGATATTGAAGACAATGAGGATAAAGAGCTGAGTGTTCAGTGGCCGGTACTGGTGATTGGATCCACCGGAGCTGCCCTTGCTGCT GCAGCAGTTGCCTATCTCGTCTATGCAAGGAGACAGTGA
AA sequence Show only first row Show all	>Lus10010937 pacid=23172444 polypeptide=Lus10010937 locus=Lus10010937.g ID=Lus10010937.BGIv1.0 annot-version=v1.0 MADEKVNTDTNGITTPTEEENHESVTIDSSDGIGDDSNEEVKLKNKIESLESRNGSLIEENEEFKNQIEKLRQEIESLKTESMEERLEELEKELEQSEAS RKTLESIAERAEQLESEVSKLQRDLIASMSQGDEYNAEIVELKKEIAVMEAKVQEAWKEKEENDKRVRELERKVGVLQMKEIEEKSKKIRMEEETRDQIA EKEAQMEKYRKRIEELQKELAEKPDLTEELKVSENRTKEMESKMAELQKQAEEAEKAIITLKQRAYESINGFDIEDNEDKELSVQWPVLVIGSTGAALAA AAVAYLVYARRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10010937 [exp]	0	1
AT2G23780			RING/U-box superfamily protein...		Lus10022492 [exp]	1.7	0.8752
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023939 [exp]	2.4	0.8685
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10008743 [exp]	4.9	0.8528
AT5G35732			unknown protein		Lus10006404 [exp]	5.5	0.8715
AT3G26000			Ribonuclease inhibitor (.1)		Lus10006438 [exp]	6.3	0.8417
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10000013 [exp]	6.3	0.8159
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	6.9	0.8582
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	8.4	0.8465
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001748 [exp]	8.7	0.8174
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031262 [exp]	9.0	0.8431

Compare expression of checked genes

Lus10010937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.