Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14130 386 / 3e-136 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT3G23730 383 / 4e-135 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G57560 377 / 7e-133 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G25810 369 / 2e-129 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57550 362 / 9e-127 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G30270 355 / 2e-124 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT4G25820 340 / 7e-118 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1) AT5G57530 339 / 8e-118 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT5G57540 339 / 9e-118 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT2G18800 338 / 4e-117 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031392 [exp] 583 / 0 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 570 / 0 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 559 / 0 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010936 [exp] 532 / 0 AT3G23730 382 / 2e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10003048 [exp] 525 / 0 AT3G23730 380 / 7e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10034098 [exp] 516 / 0 AT3G23730 376 / 5e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 444 / 3e-159 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 441 / 5e-158 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 441 / 5e-158 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G060500 [exp] 444 / 4e-159 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201250 [exp] 444 / 6e-159 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 440 / 2e-157 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 422 / 2e-150 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 403 / 4e-143 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 401 / 4e-142 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.011G077320 [exp] 387 / 1e-136 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.018G095100 [exp] 375 / 4e-132 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G005700 [exp] 377 / 5e-132 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 373 / 4e-131 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10010938 pacid=23172527 polypeptide=Lus10010938 locus=Lus10010938.g ID=Lus10010938.BGIv1.0 annot-version=v1.0 ATGGCGACTCTGCCTCTGATAATGTCGACATTGGTACTGTTGGGTCATATAATGGCCGTCTCAAATGCGAACTTCCACCAGCATTTCGACGTCACATGGG GTCAGCACCACGCTCAGATCATGAACACCGGCCAGCAGTTGACACTCTCCCTCGATAAGGATTCCGGCGCCGGATTCAAGTCCAAAAATGAGTACCTCTT CGGCCGTATCGATATGCAACTCAAGCTCATTGCCGGCAACTCCGCCGGAAGTGTCACCACATTTTATTTGTCATCGGAAGGATCGAACCACGACGAAATT GACTTCGAATTCCTTGGCAATTCGACCGGAAACCCTTACACCCTCCATACCAATGTGTTCAGTCAAGGAAAAGGCAACCGAGAGCAACAATTCCACCTCT GGTTCGACCCAACTTCCGCTTTCCACACCTACACCATCCTCTGGAACTCCCAACGAATCATATTCTTAGTGGACAACATTCCGATCAGAGTGTTCAACAA CTTGGAATCAATGGGAGTGCCATTCCCAAACAAGCAGCCGATGAGCATTCACTCGAGCTTATGGAACGCCGACGACTGGGCTACCCAAGGCGGCCGAGTC AAGGCCGACTGGACCAAGGCTCCTTTCATAGCTTCTTACAGAAACTTCAAGGCAGAGGCTTGTGTTTGGTCGCCGTCGTCGGCCTCTTCGACTTGCACTC CGGGAGCGTGGCAGACTCAGGGGATTGATGCCGCCGGCCGGAATAGGATCCGGTGGGTGCAGAGTAAATATATGATATATAATTACTGCACTGACTTGAA ACGGTTCCCTCAGGGAGTTCCAGTTGAATGCAAGCAGACTAGGTTCCTTTAA
AA sequence Show only first row Show all	>Lus10010938 pacid=23172527 polypeptide=Lus10010938 locus=Lus10010938.g ID=Lus10010938.BGIv1.0 annot-version=v1.0 MATLPLIMSTLVLLGHIMAVSNANFHQHFDVTWGQHHAQIMNTGQQLTLSLDKDSGAGFKSKNEYLFGRIDMQLKLIAGNSAGSVTTFYLSSEGSNHDEI DFEFLGNSTGNPYTLHTNVFSQGKGNREQQFHLWFDPTSAFHTYTILWNSQRIIFLVDNIPIRVFNNLESMGVPFPNKQPMSIHSSLWNADDWATQGGRV KADWTKAPFIASYRNFKAEACVWSPSSASSTCTPGAWQTQGIDAAGRNRIRWVQSKYMIYNYCTDLKRFPQGVPVECKQTRFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	0	1
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	1.0	0.9786
AT3G19680			Protein of unknown function (D...		Lus10020509 [exp]	1.4	0.9187
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	4.6	0.9107
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Lus10024065 [exp]	6.7	0.8738
AT5G18150			Methyltransferase-related prot...		Lus10034423 [exp]	7.7	0.9095
AT5G26250			Major facilitator superfamily ...		Lus10041212 [exp]	7.9	0.8911
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020772 [exp]	8.4	0.8900
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007348 [exp]	8.8	0.8944
AT1G76600			unknown protein		Lus10036322 [exp]	9.2	0.8591
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007349 [exp]	10.6	0.8756

Compare expression of checked genes

Lus10010938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.