Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23730 384 / 3e-135 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 380 / 6e-134 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57560 374 / 2e-131 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G25810 366 / 3e-128 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57550 357 / 1e-124 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G30270 350 / 2e-122 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57530 338 / 3e-117 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT5G57540 337 / 7e-117 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT5G48070 336 / 2e-116 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1) AT4G25820 335 / 3e-116 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031393 [exp] 577 / 0 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 571 / 0 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10031392 [exp] 567 / 0 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010936 [exp] 527 / 0 AT3G23730 382 / 2e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10003048 [exp] 525 / 0 AT3G23730 380 / 7e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10034098 [exp] 520 / 0 AT3G23730 376 / 5e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 442 / 3e-158 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 440 / 2e-157 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 440 / 2e-157 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G201250 [exp] 452 / 2e-162 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 447 / 3e-160 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 445 / 2e-159 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 422 / 1e-150 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 409 / 3e-145 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 402 / 1e-142 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.011G077320 [exp] 389 / 2e-137 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.013G005700 [exp] 376 / 1e-131 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 372 / 1e-130 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 369 / 2e-129 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10010939 pacid=23172533 polypeptide=Lus10010939 locus=Lus10010939.g ID=Lus10010939.BGIv1.0 annot-version=v1.0 ATGGCGACCAGTACTCTGCCTCTGTTAATGGTGTTGGCGTGTCATTTAATGGCCATCTCAAATGCAAACTTCCACCAGCATTTCGACGTCACATGGGGTC AGCACCATGCTCAGATCATGAACACCGGCCAGCAGTTGACACTCTCGCTCGACAAGGATTCCGGCGCCGGATTCAAGTCCAAAAACGAGTACCTCTTCGG CCGTATCGATATGCAACTCAAGCTCATCGCCGGCAACTCCGCCGGAAGTGTCACCACATTTTATTTGTCATCGGAAGGACCGAACCACGACGAAATCGAC TTCGAATTCCTTGGCAATTCGACCGGAAACCCTTACACCCTCCATACCAATGTGTTCAGTCAAGGAAAAGGCAACCGAGAGCAACAATTCCACCTCTGGT TCGACCCAACTTCCGCTTTCCACACCTACACCATCCTCTGGAACTCCCAACGAATCATATTCTTGGTGGACAACATTCCGATTAGAGTGTTCAACAACTT GGAATCAATGGGAGTGCCATTCCCAAACAAGCAGCCGATGAGCATTCACTCTAGCTTATGGAACGCCGACGACTGGGCTACCCAAGGCGGCCGAGTCAAG GCCGACTGGACCAAGGCTCCTTTCATAGCTTCTTACAGAAACTTCAAGGCAGAGGCTTGTGTTTGGTCGCCGTCGTCGGCCTCTTCGACTTGCACTCCGG GAGCGTGGCAGACTCAGGGGATTGATGCTGCCGGCAGGAACAGGATCCGGTGGGTGCAGAGCAAATATATGATCTATAATTACTGCACTGACTTGAAACG TTTCCCTAAAGGAGTTCCAGTTGAATGCAAGCAGACTAGGTTCCTTTGA
AA sequence Show only first row Show all	>Lus10010939 pacid=23172533 polypeptide=Lus10010939 locus=Lus10010939.g ID=Lus10010939.BGIv1.0 annot-version=v1.0 MATSTLPLLMVLACHLMAISNANFHQHFDVTWGQHHAQIMNTGQQLTLSLDKDSGAGFKSKNEYLFGRIDMQLKLIAGNSAGSVTTFYLSSEGPNHDEID FEFLGNSTGNPYTLHTNVFSQGKGNREQQFHLWFDPTSAFHTYTILWNSQRIIFLVDNIPIRVFNNLESMGVPFPNKQPMSIHSSLWNADDWATQGGRVK ADWTKAPFIASYRNFKAEACVWSPSSASSTCTPGAWQTQGIDAAGRNRIRWVQSKYMIYNYCTDLKRFPKGVPVECKQTRFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	0	1
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	1.0	0.9786
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	2.0	0.9445
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Lus10024065 [exp]	2.4	0.9066
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	3.5	0.9391
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	5.7	0.9342
AT1G76600			unknown protein		Lus10036322 [exp]	7.9	0.8620
AT4G23030			MATE efflux family protein (.1...		Lus10027417 [exp]	8.0	0.9044
AT4G24110			unknown protein		Lus10017328 [exp]	8.2	0.8737
					Lus10034979 [exp]	10.5	0.9075
AT3G19680			Protein of unknown function (D...		Lus10020509 [exp]	10.8	0.8826

Compare expression of checked genes

Lus10010939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.